Atomistry » Iron » PDB 2hkx-2ibn » 2hx3
Atomistry »
  Iron »
    PDB 2hkx-2ibn »
      2hx3 »

Iron in PDB 2hx3: Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine

Enzymatic activity of Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine

All present enzymatic activity of Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine:
1.14.13.39;

Protein crystallography data

The structure of Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine, PDB code: 2hx3 was solved by J.Igarashi, H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.50 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.910, 111.660, 164.210, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 25.8

Other elements in 2hx3:

The structure of Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine (pdb code 2hx3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine, PDB code: 2hx3:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2hx3

Go back to Iron Binding Sites List in 2hx3
Iron binding site 1 out of 2 in the Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe750

b:27.6
occ:1.00
FE A:HEM750 0.0 27.6 1.0
NA A:HEM750 2.0 28.8 1.0
NC A:HEM750 2.0 25.3 1.0
ND A:HEM750 2.0 29.1 1.0
NB A:HEM750 2.1 28.5 1.0
SG A:CYS415 2.3 27.7 1.0
C4C A:HEM750 3.0 26.6 1.0
C1A A:HEM750 3.1 28.3 1.0
C1C A:HEM750 3.1 28.8 1.0
C4D A:HEM750 3.1 28.0 1.0
C4A A:HEM750 3.1 29.0 1.0
C1D A:HEM750 3.1 26.9 1.0
C1B A:HEM750 3.1 26.8 1.0
C4B A:HEM750 3.1 29.5 1.0
CB A:CYS415 3.3 27.5 1.0
CHD A:HEM750 3.4 27.6 1.0
CHA A:HEM750 3.4 27.9 1.0
CHB A:HEM750 3.5 28.2 1.0
CHC A:HEM750 3.5 30.6 1.0
NH1 A:3HX793 4.0 37.0 1.0
CA A:CYS415 4.1 25.6 1.0
C3C A:HEM750 4.3 28.1 1.0
C2A A:HEM750 4.3 30.7 1.0
C3D A:HEM750 4.3 30.0 1.0
C2C A:HEM750 4.3 29.5 1.0
C2D A:HEM750 4.3 29.3 1.0
C3A A:HEM750 4.3 30.1 1.0
C2B A:HEM750 4.3 28.8 1.0
C3B A:HEM750 4.4 31.2 1.0
NO A:3HX793 4.4 34.8 1.0
CZ A:3HX793 4.4 39.6 1.0
NE1 A:TRP409 4.5 28.9 1.0
O3 A:3HX793 4.8 31.5 1.0
C A:CYS415 4.9 26.2 1.0
O2 A:3HX793 4.9 33.9 1.0
NH2 A:3HX793 4.9 35.8 1.0
N A:GLY417 4.9 23.5 1.0
N A:VAL416 5.0 24.8 1.0

Iron binding site 2 out of 2 in 2hx3

Go back to Iron Binding Sites List in 2hx3
Iron binding site 2 out of 2 in the Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Rat Nnos Heme Domain Complexed with (4S)-N-{4-Amino-5-[(2-Aminoethyl)- Hydroxyamino]-Pentyl}-N'-Nitroguanidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe750

b:26.5
occ:1.00
FE B:HEM750 0.0 26.5 1.0
NC B:HEM750 2.0 25.4 1.0
NB B:HEM750 2.0 26.9 1.0
NA B:HEM750 2.0 29.3 1.0
ND B:HEM750 2.0 27.2 1.0
SG B:CYS415 2.3 27.2 1.0
C4B B:HEM750 3.0 28.4 1.0
C1D B:HEM750 3.0 27.9 1.0
C1A B:HEM750 3.0 29.2 1.0
C4D B:HEM750 3.1 27.3 1.0
C1C B:HEM750 3.1 25.2 1.0
C4C B:HEM750 3.1 25.1 1.0
C1B B:HEM750 3.1 29.0 1.0
C4A B:HEM750 3.1 28.6 1.0
CB B:CYS415 3.3 21.7 1.0
CHC B:HEM750 3.4 27.0 1.0
CHD B:HEM750 3.4 27.4 1.0
CHA B:HEM750 3.4 29.0 1.0
CHB B:HEM750 3.5 28.6 1.0
NH1 B:3HX793 3.9 36.7 1.0
CA B:CYS415 4.1 25.4 1.0
C3D B:HEM750 4.3 30.5 1.0
C2D B:HEM750 4.3 27.7 1.0
C2A B:HEM750 4.3 30.1 1.0
C2B B:HEM750 4.3 26.9 1.0
C2C B:HEM750 4.3 26.2 1.0
C3C B:HEM750 4.3 26.5 1.0
C3B B:HEM750 4.3 31.3 1.0
C3A B:HEM750 4.3 28.8 1.0
CZ B:3HX793 4.3 37.5 1.0
NO B:3HX793 4.3 35.5 1.0
NE1 B:TRP409 4.4 24.9 1.0
O2 B:3HX793 4.6 35.8 1.0
NH2 B:3HX793 4.8 34.2 1.0
N B:GLY417 4.8 25.6 1.0
C B:CYS415 4.9 26.4 1.0
NE B:3HX793 4.9 39.4 1.0
O3 B:3HX793 5.0 37.8 1.0
N B:VAL416 5.0 26.8 1.0

Reference:

J.Seo, J.Igarashi, H.Li, P.Martasek, L.J.Roman, T.L.Poulos, R.B.Silverman. Structure-Based Design and Synthesis of N(Omega)-Nitro-L-Arginine-Containing Peptidomimetics As Selective Inhibitors of Neuronal Nitric Oxide Synthase. Displacement of the Heme Structural Water. J.Med.Chem. V. 50 2089 2007.
ISSN: ISSN 0022-2623
PubMed: 17425297
DOI: 10.1021/JM061305C
Page generated: Thu Jul 17 02:10:30 2025

Last articles

Zn in 1WGE
Zn in 1WFZ
Zn in 1WFP
Zn in 1WFL
Zn in 1WFX
Zn in 1WFK
Zn in 1WFF
Zn in 1WFH
Zn in 1WFE
Zn in 1WAA
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy