Iron in PDB 2itb: Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution

The structure of Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution, PDB code: 2itb was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.80 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.274, 70.215, 84.285, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 22.9

The binding sites of Iron atom in the Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution (pdb code 2itb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution, PDB code: 2itb:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:38.9 occ:1.00 OE1 A:GLU38 2.1 28.4 1.0 O A:HOH512 2.1 34.8 1.0 OE1 A:GLU69 2.1 37.7 1.0 O A:HOH511 2.2 29.1 1.0 ND1 A:HIS72 2.5 34.2 1.0 O2 A:PER503 2.7 40.2 1.0 CD A:GLU38 3.1 30.9 1.0 CD A:GLU69 3.2 34.3 1.0 FE A:FE502 3.2 42.5 1.0 OE2 A:GLU151 3.2 68.5 1.0 O1 A:PER503 3.3 45.5 1.0 CE1 A:HIS72 3.3 30.2 1.0 OE2 A:GLU38 3.4 39.2 1.0 OE2 A:GLU69 3.6 44.8 1.0 CG A:HIS72 3.6 30.7 1.0 OE1 A:GLU151 3.9 64.4 1.0 CD A:GLU151 4.0 57.8 1.0 CB A:HIS72 4.0 26.1 1.0 CE1 A:HIS154 4.4 41.5 1.0 CG A:GLU38 4.4 29.2 1.0 CG A:GLU69 4.5 32.6 1.0 ND1 A:HIS154 4.5 36.6 1.0 NE2 A:HIS72 4.5 27.6 1.0 CA A:GLU69 4.5 25.4 1.0 CD2 A:HIS72 4.7 26.1 1.0 CB A:GLU69 4.7 25.9 1.0 CB A:GLU38 4.8 24.6 1.0 CA A:GLU38 4.9 24.4 1.0 OE1 A:GLU122 5.0 36.7 1.0

Iron binding site 2 out of 4 in the Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:42.5 occ:1.00 O A:HOH512 2.2 34.8 1.0 OE2 A:GLU69 2.2 44.8 1.0 ND1 A:HIS154 2.2 36.6 1.0 OE2 A:GLU122 2.3 34.1 1.0 OE1 A:GLU122 2.3 36.7 1.0 CD A:GLU122 2.6 27.6 1.0 O1 A:PER503 2.7 45.5 1.0 CE1 A:HIS154 3.0 41.5 1.0 CD A:GLU69 3.0 34.3 1.0 FE A:FE501 3.2 38.9 1.0 OE1 A:GLU69 3.2 37.7 1.0 CG A:HIS154 3.3 35.9 1.0 OE1 A:GLU151 3.5 64.4 1.0 O2 A:PER503 3.6 40.2 1.0 CB A:HIS154 3.7 29.9 1.0 OE2 A:GLU151 4.0 68.5 1.0 CD A:GLU151 4.0 57.8 1.0 CG A:GLU122 4.1 25.0 1.0 NE2 A:HIS154 4.1 27.8 1.0 CD2 A:HIS154 4.3 37.3 1.0 O2 A:EDO510 4.4 31.4 1.0 CG A:GLU69 4.4 32.6 1.0 C2 A:EDO510 4.7 33.7 1.0 O A:HOH511 4.8 29.1 1.0 CD1 A:LEU65 4.9 44.5 1.0 CA A:GLU151 5.0 37.6 1.0 CB A:GLU122 5.0 25.1 1.0 ND1 A:HIS72 5.0 34.2 1.0

Iron binding site 3 out of 4 in the Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:38.8 occ:1.00 OE1 B:GLU69 2.1 41.0 1.0 OE1 B:GLU38 2.2 34.4 1.0 O B:HOH514 2.2 31.4 1.0 O4 B:UNL503 2.3 42.9 1.0 ND1 B:HIS72 2.6 26.1 1.0 CD B:GLU38 3.0 32.0 1.0 FE B:FE502 3.1 40.1 1.0 CD B:GLU69 3.2 35.8 1.0 OE1 B:GLU151 3.2 67.8 1.0 OE2 B:GLU38 3.3 32.8 1.0 OE2 B:GLU151 3.4 70.9 1.0 CE1 B:HIS72 3.4 32.4 1.0 OE2 B:GLU69 3.6 43.0 1.0 CG B:HIS72 3.6 28.4 1.0 CD B:GLU151 3.7 61.0 1.0 O3 B:UNL503 4.0 48.7 1.0 CB B:HIS72 4.0 29.2 1.0 O2 B:UNL503 4.3 33.4 1.0 O1 B:UNL503 4.3 46.8 1.0 CG B:GLU38 4.4 27.1 1.0 CA B:GLU69 4.5 25.4 1.0 CG B:GLU69 4.5 28.5 1.0 CE1 B:HIS154 4.5 39.7 1.0 NE2 B:HIS72 4.6 24.7 1.0 ND1 B:HIS154 4.6 38.6 1.0 CD2 B:HIS72 4.7 27.7 1.0 CB B:GLU69 4.8 27.8 1.0 CB B:GLU38 4.9 27.6 1.0 CA B:GLU38 4.9 25.3 1.0

Iron binding site 4 out of 4 in the Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Putative Trna-(Ms(2)Io(6)A)-Hydroxylase (PP_2188) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe502 b:40.1 occ:1.00 OE2 B:GLU69 2.3 43.0 1.0 ND1 B:HIS154 2.4 38.6 1.0 OE1 B:GLU122 2.4 41.3 1.0 OE2 B:GLU122 2.4 39.4 1.0 OE1 B:GLU151 2.6 67.8 1.0 O3 B:UNL503 2.7 48.7 1.0 CD B:GLU122 2.7 29.1 1.0 O4 B:UNL503 2.8 42.9 1.0 CD B:GLU69 3.1 35.8 1.0 FE B:FE501 3.1 38.8 1.0 CE1 B:HIS154 3.1 39.7 1.0 OE1 B:GLU69 3.2 41.0 1.0 CD B:GLU151 3.4 61.0 1.0 CG B:HIS154 3.5 38.8 1.0 OE2 B:GLU151 3.6 70.9 1.0 CB B:HIS154 3.9 35.1 1.0 CG B:GLU122 4.2 26.7 1.0 O2 B:UNL503 4.3 33.4 1.0 NE2 B:HIS154 4.3 28.1 1.0 O B:HOH514 4.4 31.4 1.0 O1 B:EDO510 4.4 42.9 1.0 CG B:GLU69 4.5 28.5 1.0 CD2 B:HIS154 4.5 38.3 1.0 CA B:GLU151 4.7 34.6 1.0 CG B:GLU151 4.7 48.3 1.0 OE1 B:GLU38 4.9 34.4 1.0 ND1 B:HIS72 5.0 26.1 1.0 CB B:GLU151 5.0 39.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.