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Iron in PDB 2mbw: Recombinant Sperm Whale Myoglobin (Met)

Protein crystallography data

The structure of Recombinant Sperm Whale Myoglobin (Met), PDB code: 2mbw was solved by E.A.Brucker, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 1.50
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 91.390, 91.390, 45.750, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Recombinant Sperm Whale Myoglobin (Met) (pdb code 2mbw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Recombinant Sperm Whale Myoglobin (Met), PDB code: 2mbw:

Iron binding site 1 out of 1 in 2mbw

Go back to Iron Binding Sites List in 2mbw
Iron binding site 1 out of 1 in the Recombinant Sperm Whale Myoglobin (Met)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Recombinant Sperm Whale Myoglobin (Met) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:8.9
occ:1.00
FE A:HEM154 0.0 8.9 1.0
NA A:HEM154 1.9 9.1 1.0
NC A:HEM154 2.0 9.8 1.0
NB A:HEM154 2.0 8.3 1.0
ND A:HEM154 2.0 10.2 1.0
NE2 A:HIS93 2.2 9.3 1.0
O A:HOH155 2.2 11.6 1.0
C4A A:HEM154 3.0 9.0 1.0
C1C A:HEM154 3.0 9.3 1.0
C1A A:HEM154 3.0 9.8 1.0
C4B A:HEM154 3.0 8.6 1.0
C1B A:HEM154 3.0 8.9 1.0
C4C A:HEM154 3.1 9.9 1.0
C1D A:HEM154 3.1 10.5 1.0
C4D A:HEM154 3.1 10.6 1.0
CE1 A:HIS93 3.2 10.2 1.0
CD2 A:HIS93 3.2 10.0 1.0
CHB A:HEM154 3.4 8.9 1.0
CHC A:HEM154 3.4 9.3 1.0
CHD A:HEM154 3.4 10.0 1.0
CHA A:HEM154 3.4 10.0 1.0
C3A A:HEM154 4.3 9.6 1.0
ND1 A:HIS93 4.3 10.3 1.0
C3D A:HEM154 4.3 11.4 1.0
C2D A:HEM154 4.3 10.9 1.0
C3C A:HEM154 4.3 10.6 1.0
C3B A:HEM154 4.3 9.0 1.0
C2C A:HEM154 4.3 10.1 1.0
C2B A:HEM154 4.3 8.7 1.0
C2A A:HEM154 4.3 9.9 1.0
CG A:HIS93 4.3 10.1 1.0
NE2 A:HIS64 4.4 13.0 1.0
O A:HOH201 4.4 24.6 0.2
CE1 A:HIS64 4.8 13.4 1.0
CG2 A:VAL68 4.8 9.8 1.0

Reference:

E.A.Brucker, J.S.Olson, G.N.Phillips Jr., Y.Dou, M.Ikeda-Saito. High Resolution Crystal Structures of the Deoxy, Oxy, and Aquomet Forms of Cobalt Myoglobin. J.Biol.Chem. V. 271 25419 1996.
ISSN: ISSN 0021-9258
PubMed: 8810310
DOI: 10.1074/JBC.271.41.25419
Page generated: Thu Jul 17 02:52:44 2025

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