Atomistry » Iron » PDB 2pgh-2q9u » 2pq7
Atomistry »
  Iron »
    PDB 2pgh-2q9u »
      2pq7 »

Iron in PDB 2pq7: Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution

Protein crystallography data

The structure of Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution, PDB code: 2pq7 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.44 / 1.45
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 138.518, 40.662, 37.789, 90.00, 95.32, 90.00
R / Rfree (%) 18.3 / 19.3

Other elements in 2pq7:

The structure of Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution (pdb code 2pq7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution, PDB code: 2pq7:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2pq7

Go back to Iron Binding Sites List in 2pq7
Iron binding site 1 out of 2 in the Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe220

b:16.8
occ:1.00
O A:HOH236 2.0 18.8 1.0
OD1 A:ASP66 2.0 13.7 1.0
O3 A:PO4223 2.1 21.2 1.0
O3 A:PO4224 2.1 22.7 1.0
NE2 A:HIS111 2.2 15.7 1.0
NE2 A:HIS79 2.2 16.9 1.0
CG A:ASP66 3.1 16.7 1.0
CD2 A:HIS111 3.1 17.8 1.0
CE1 A:HIS79 3.2 18.2 1.0
CD2 A:HIS79 3.2 16.5 1.0
CE1 A:HIS111 3.2 13.5 1.0
P A:PO4224 3.3 51.6 1.0
P A:PO4223 3.3 28.7 1.0
OD2 A:ASP66 3.4 15.4 1.0
FE A:FE221 3.6 17.1 1.0
O2 A:PO4224 3.6 56.3 1.0
O4 A:PO4223 3.7 22.2 1.0
CD2 A:HIS65 4.0 13.9 1.0
O1 A:PO4224 4.1 46.4 1.0
O1 A:PO4223 4.2 34.7 1.0
ND1 A:HIS79 4.3 19.6 1.0
NE A:ARG69 4.3 32.5 1.0
CG A:HIS111 4.3 17.0 1.0
NE2 A:HIS65 4.3 13.8 1.0
ND1 A:HIS111 4.3 15.1 1.0
CG A:HIS79 4.4 15.6 1.0
O2 A:PO4223 4.4 33.6 1.0
CB A:ASP66 4.4 12.6 1.0
O4 A:PO4224 4.4 55.1 1.0
OD2 A:ASP131 4.5 21.1 1.0
NH2 A:ARG69 4.6 34.5 1.0
O A:HIS65 4.7 13.7 1.0
CA A:ASP66 4.8 11.8 1.0
CG A:ARG69 4.9 27.4 1.0
CG A:ARG112 4.9 35.5 1.0
OD1 A:ASP131 4.9 17.6 1.0
CZ A:ARG69 4.9 33.0 1.0

Iron binding site 2 out of 2 in 2pq7

Go back to Iron Binding Sites List in 2pq7
Iron binding site 2 out of 2 in the Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium at 1.45 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe221

b:17.1
occ:1.00
O A:HOH236 2.1 18.8 1.0
OD2 A:ASP66 2.1 15.4 1.0
OD1 A:ASP131 2.1 17.6 1.0
NE2 A:HIS36 2.2 18.2 1.0
NE2 A:HIS65 2.2 13.8 1.0
O4 A:PO4223 2.2 22.2 1.0
CG A:ASP66 3.1 16.7 1.0
CG A:ASP131 3.1 16.1 1.0
CE1 A:HIS36 3.1 18.8 1.0
CD2 A:HIS65 3.1 13.9 1.0
CD2 A:HIS36 3.1 19.2 1.0
CE1 A:HIS65 3.3 12.0 1.0
P A:PO4223 3.3 28.7 1.0
OD1 A:ASP66 3.4 13.7 1.0
OD2 A:ASP131 3.5 21.1 1.0
FE A:FE220 3.6 16.8 1.0
O3 A:PO4223 3.6 21.2 1.0
O2 A:PO4223 4.0 33.6 1.0
O A:HOH354 4.2 50.0 1.0
ND1 A:HIS36 4.2 17.9 1.0
CG A:HIS36 4.3 16.9 1.0
CG A:HIS65 4.3 14.5 1.0
ND1 A:HIS65 4.3 12.5 1.0
CB A:ASP131 4.3 14.0 1.0
O2 A:PO4224 4.3 56.3 1.0
CB A:ASP66 4.3 12.6 1.0
O1 A:PO4223 4.6 34.7 1.0
CG2 A:VAL40 4.6 15.4 1.0
NE2 A:HIS111 4.7 15.7 1.0
CD2 A:HIS111 4.8 17.8 1.0
O3 A:PO4224 4.9 22.7 1.0
O A:HOH258 4.9 26.3 1.0
CA A:ASP131 4.9 16.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Aug 4 01:28:13 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy