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Iron in PDB 2qmb: Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution

Protein crystallography data

The structure of Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution, PDB code: 2qmb was solved by C.Packianathan, S.Sundaresan, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.43 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.000, 79.795, 103.920, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 28.4

Iron Binding Sites:

The binding sites of Iron atom in the Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution (pdb code 2qmb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution, PDB code: 2qmb:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2qmb

Go back to Iron Binding Sites List in 2qmb
Iron binding site 1 out of 4 in the Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe150

b:30.1
occ:1.00
 FE A:HEM150 0.0 30.1 1.0
O1 A:OXY151 1.7 46.0 1.0
NB A:HEM150 1.7 24.8 1.0
NC A:HEM150 1.8 32.2 1.0
NA A:HEM150 2.0 28.3 1.0
NE2 A:HIS87 2.0 30.6 1.0
ND A:HEM150 2.1 32.5 1.0
O2 A:OXY151 2.5 44.3 1.0
C4B A:HEM150 2.8 28.6 1.0
CE1 A:HIS87 2.8 29.8 1.0
C4C A:HEM150 2.9 37.5 1.0
C1B A:HEM150 2.9 24.4 1.0
C1C A:HEM150 2.9 32.1 1.0
C1D A:HEM150 3.0 35.0 1.0
C4D A:HEM150 3.0 36.9 1.0
C1A A:HEM150 3.1 32.2 1.0
C4A A:HEM150 3.1 28.3 1.0
CD2 A:HIS87 3.2 23.5 1.0
CHD A:HEM150 3.3 36.1 1.0
CHC A:HEM150 3.3 33.6 1.0
CHA A:HEM150 3.4 34.5 1.0
CHB A:HEM150 3.4 27.0 1.0
C3B A:HEM150 4.0 28.3 1.0
ND1 A:HIS87 4.0 22.5 1.0
C3C A:HEM150 4.1 34.3 1.0
C2B A:HEM150 4.1 25.4 1.0
C2C A:HEM150 4.2 32.3 1.0
CG A:HIS87 4.2 25.0 1.0
NE2 A:HIS58 4.2 39.1 1.0
C2D A:HEM150 4.3 39.3 1.0
C3D A:HEM150 4.3 38.6 1.0
C2A A:HEM150 4.3 33.3 1.0
C3A A:HEM150 4.3 30.8 1.0
CE1 A:HIS58 4.6 40.8 1.0
CG2 A:VAL62 4.8 18.1 1.0

Iron binding site 2 out of 4 in 2qmb

Go back to Iron Binding Sites List in 2qmb
Iron binding site 2 out of 4 in the Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe150

b:29.6
occ:1.00
 FE B:HEM150 0.0 29.6 1.0
NC B:HEM150 1.5 23.9 1.0
O1 B:OXY151 1.7 34.3 1.0
ND B:HEM150 2.0 29.0 1.0
NE2 B:HIS92 2.0 27.8 1.0
NB B:HEM150 2.1 22.8 1.0
NA B:HEM150 2.1 29.1 1.0
O2 B:OXY151 2.5 48.6 1.0
C4C B:HEM150 2.6 20.9 1.0
C1C B:HEM150 2.7 24.6 1.0
CE1 B:HIS92 2.9 24.4 1.0
C1A B:HEM150 3.0 29.6 1.0
C4D B:HEM150 3.0 29.6 1.0
C4B B:HEM150 3.1 24.4 1.0
C1B B:HEM150 3.1 25.1 1.0
C1D B:HEM150 3.1 27.7 1.0
CD2 B:HIS92 3.1 31.9 1.0
CHA B:HEM150 3.1 28.4 1.0
C4A B:HEM150 3.2 31.4 1.0
CHD B:HEM150 3.4 20.4 1.0
CHC B:HEM150 3.5 22.8 1.0
CHB B:HEM150 3.5 29.3 1.0
C3C B:HEM150 3.8 23.8 1.0
C2C B:HEM150 3.9 21.1 1.0
ND1 B:HIS92 4.0 33.0 1.0
CG B:HIS92 4.2 32.2 1.0
C3B B:HEM150 4.3 27.5 1.0
C2A B:HEM150 4.3 31.4 1.0
C2B B:HEM150 4.3 26.2 1.0
C3D B:HEM150 4.3 30.1 1.0
C2D B:HEM150 4.4 30.3 1.0
NE2 B:HIS63 4.4 27.9 1.0
C3A B:HEM150 4.4 28.0 1.0
CE1 B:HIS63 4.9 30.4 1.0

Iron binding site 3 out of 4 in 2qmb

Go back to Iron Binding Sites List in 2qmb
Iron binding site 3 out of 4 in the Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe150

b:34.5
occ:1.00
 FE C:HEM150 0.0 34.5 1.0
O1 C:OXY151 1.7 60.8 1.0
ND C:HEM150 2.0 27.4 1.0
NA C:HEM150 2.0 33.6 1.0
NC C:HEM150 2.1 33.0 1.0
NB C:HEM150 2.1 30.4 1.0
NE2 C:HIS87 2.1 25.7 1.0
O2 C:OXY151 2.5 64.8 1.0
C1D C:HEM150 2.9 25.3 1.0
C4C C:HEM150 2.9 28.0 1.0
C1A C:HEM150 2.9 32.1 1.0
C4D C:HEM150 3.0 25.3 1.0
C4B C:HEM150 3.1 29.2 1.0
CE1 C:HIS87 3.1 27.8 1.0
C4A C:HEM150 3.1 33.4 1.0
C1B C:HEM150 3.1 35.7 1.0
CD2 C:HIS87 3.1 26.4 1.0
CHD C:HEM150 3.1 28.7 1.0
C1C C:HEM150 3.2 28.4 1.0
CHA C:HEM150 3.4 27.3 1.0
CHC C:HEM150 3.5 30.0 1.0
CHB C:HEM150 3.5 31.4 1.0
C2A C:HEM150 4.1 36.7 1.0
C2D C:HEM150 4.2 23.9 1.0
C3C C:HEM150 4.2 25.1 1.0
C3A C:HEM150 4.2 34.6 1.0
ND1 C:HIS87 4.2 25.8 1.0
C3D C:HEM150 4.2 25.0 1.0
CG C:HIS87 4.3 26.7 1.0
NE2 C:HIS58 4.3 41.1 1.0
C2C C:HEM150 4.3 25.4 1.0
C3B C:HEM150 4.3 34.1 1.0
C2B C:HEM150 4.3 31.8 1.0
CE1 C:HIS58 4.8 34.1 1.0
CG2 C:VAL62 4.9 25.7 1.0

Iron binding site 4 out of 4 in 2qmb

Go back to Iron Binding Sites List in 2qmb
Iron binding site 4 out of 4 in the Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure Determination of Haemoglobin From Turkey(Meleagris Gallopavo) at 2.8 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe150

b:56.3
occ:1.00
 FE D:HEM150 0.0 56.3 1.0
O1 D:OXY151 1.7 46.6 1.0
CE1 D:HIS92 1.9 58.9 1.0
NC D:HEM150 2.0 56.4 1.0
NB D:HEM150 2.0 58.6 1.0
ND D:HEM150 2.1 55.1 1.0
NA D:HEM150 2.2 57.9 1.0
O2 D:OXY151 2.5 67.2 1.0
NE2 D:HIS92 2.7 56.0 1.0
C1D D:HEM150 2.9 56.6 1.0
C4C D:HEM150 2.9 56.0 1.0
C1B D:HEM150 3.0 58.6 1.0
ND1 D:HIS92 3.1 61.4 1.0
C4B D:HEM150 3.1 61.9 1.0
C1C D:HEM150 3.1 57.2 1.0
C4A D:HEM150 3.1 57.4 1.0
CHD D:HEM150 3.2 60.3 1.0
C4D D:HEM150 3.2 59.2 1.0
C1A D:HEM150 3.3 56.9 1.0
CHB D:HEM150 3.4 59.8 1.0
CHC D:HEM150 3.5 59.3 1.0
CHA D:HEM150 3.7 58.9 1.0
CD2 D:HIS92 3.9 57.8 1.0
CG D:HIS92 4.1 60.7 1.0
C2D D:HEM150 4.2 57.4 1.0
C3C D:HEM150 4.2 52.3 1.0
C2B D:HEM150 4.3 58.3 1.0
C2C D:HEM150 4.3 53.5 1.0
C3B D:HEM150 4.3 61.7 1.0
C3D D:HEM150 4.3 59.9 1.0
NE2 D:HIS63 4.4 48.4 1.0
C3A D:HEM150 4.4 58.6 1.0
C2A D:HEM150 4.4 58.5 1.0
CE1 D:HIS63 5.0 49.3 1.0

Reference:

C.Packianathan, S.Sundaresan, M.N.Ponnuswamy. X-Ray Crystal Structure Analysis of Hemoglobin From Turkey(Meleagris Gallopavo) at 2.80 Angstrom Resolution To Be Published.
Page generated: Sun Aug 4 01:47:23 2024

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