Atomistry » Iron » PDB 2r1m-2rfb » 2r1n
Atomistry »
  Iron »
    PDB 2r1m-2rfb »
      2r1n »

Iron in PDB 2r1n: Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A

Enzymatic activity of Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A

All present enzymatic activity of Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A:
3.1.8.1;

Protein crystallography data

The structure of Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A, PDB code: 2r1n was solved by D.L.Ollis, C.J.Jackson, J.L.Foo, H.K.Kim, P.D.Carr, J.W.Liu, G.Salem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 1.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 108.695, 108.695, 62.649, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 19

Other elements in 2r1n:

The structure of Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A (pdb code 2r1n). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A, PDB code: 2r1n:

Iron binding site 1 out of 1 in 2r1n

Go back to Iron Binding Sites List in 2r1n
Iron binding site 1 out of 1 in the Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Opda From Agrobacterium Radiobacter with Bound Slow Substrate Diethyl 4-Methoxyphenyl Phosphate (20H)- 1.7 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe800

b:13.0
occ:0.92
 O A:HOH1118 1.9 17.4 1.0
OQ1 A:KCX169 2.1 12.2 1.0
NE2 A:HIS57 2.1 12.2 1.0
OD1 A:ASP301 2.2 11.9 1.0
NE2 A:HIS55 2.2 14.3 1.0
CG A:ASP301 3.0 10.7 1.0
CX A:KCX169 3.1 13.2 1.0
CE1 A:HIS57 3.1 15.1 1.0
CD2 A:HIS55 3.1 10.6 1.0
CD2 A:HIS57 3.1 12.1 1.0
CE1 A:HIS55 3.2 10.9 1.0
OD2 A:ASP301 3.3 13.2 1.0
OQ2 A:KCX169 3.3 16.3 1.0
CO A:CO801 3.4 15.5 0.9
C10 A:EPL701 4.1 15.7 0.5
CG2 A:VAL101 4.2 13.9 1.0
CE1 A:HIS230 4.2 13.2 1.0
NZ A:KCX169 4.2 16.2 1.0
ND1 A:HIS57 4.2 13.3 1.0
CG A:HIS57 4.3 12.2 1.0
ND1 A:HIS55 4.3 10.2 1.0
CG A:HIS55 4.3 10.2 1.0
NE2 A:HIS230 4.3 13.5 1.0
CB A:ASP301 4.4 9.9 1.0
O2 A:EPL701 4.4 11.6 0.5
C8 A:EPL701 4.5 11.8 0.5
C11 A:EPL701 4.7 13.2 0.5
CA A:ASP301 4.8 11.0 1.0
O1 A:EPL701 4.8 12.0 0.5
O4 A:EPL701 4.9 14.9 0.5
P A:EPL701 4.9 17.4 0.5

Reference:

C.J.Jackson, J.L.Foo, H.K.Kim, P.D.Carr, J.W.Liu, G.Salem, D.L.Ollis. In Crystallo Capture of A Michaelis Complex and Product-Binding Modes of A Bacterial Phosphotriesterase J.Mol.Biol. V. 375 1189 2008.
ISSN: ISSN 0022-2836
PubMed: 18082180
DOI: 10.1016/J.JMB.2007.10.061
Page generated: Thu Jul 17 03:53:15 2025

Last articles

Mg in 3HYL
Mg in 3HY3
Mg in 3HY4
Mg in 3HXT
Mg in 3HY2
Mg in 3HXY
Mg in 3HY1
Mg in 3HX0
Mg in 3HXX
Mg in 3HXM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy