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Iron in PDB 2rbt: N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G

Enzymatic activity of N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G

All present enzymatic activity of N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G:
1.11.1.5;

Protein crystallography data

The structure of N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G, PDB code: 2rbt was solved by A.P.Graves, S.E.Boyce, B.K.Shoichet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.24
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.989, 75.752, 107.080, 90.00, 90.00, 90.00
R / Rfree (%) 12.2 / 14.6

Iron Binding Sites:

The binding sites of Iron atom in the N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G (pdb code 2rbt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G, PDB code: 2rbt:

Iron binding site 1 out of 1 in 2rbt

Go back to Iron Binding Sites List in 2rbt
Iron binding site 1 out of 1 in the N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of N-Methylbenzylamine in Complex with Cytochrome C Peroxidase W191G within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe400

b:11.4
occ:1.00
FE X:HEM400 0.0 11.4 1.0
O X:HOH4162 1.9 14.2 1.0
ND X:HEM400 2.0 11.4 1.0
NA X:HEM400 2.0 11.7 1.0
NB X:HEM400 2.0 11.2 1.0
NC X:HEM400 2.0 10.9 1.0
NE2 X:HIS175 2.0 11.4 1.0
CE1 X:HIS175 3.0 11.2 1.0
C4B X:HEM400 3.0 11.1 1.0
C1A X:HEM400 3.0 12.0 1.0
CD2 X:HIS175 3.0 11.7 1.0
C1C X:HEM400 3.0 10.8 1.0
C4D X:HEM400 3.0 11.7 1.0
C4A X:HEM400 3.0 11.8 1.0
C1D X:HEM400 3.1 10.5 1.0
C4C X:HEM400 3.1 9.8 1.0
C1B X:HEM400 3.1 11.3 1.0
CHD X:HEM400 3.4 10.4 1.0
CHC X:HEM400 3.4 10.5 1.0
CHA X:HEM400 3.4 11.7 1.0
CHB X:HEM400 3.4 11.3 1.0
NE1 X:TRP51 4.0 13.8 1.0
NE X:ARG48 4.0 15.1 1.0
ND1 X:HIS175 4.1 10.6 1.0
CG X:HIS175 4.2 10.7 1.0
O X:HOH4063 4.2 17.1 1.0
C2A X:HEM400 4.3 12.1 1.0
C3B X:HEM400 4.3 11.0 1.0
C3C X:HEM400 4.3 10.1 1.0
C2B X:HEM400 4.3 11.2 1.0
C3A X:HEM400 4.3 12.4 1.0
C2C X:HEM400 4.3 10.8 1.0
C2D X:HEM400 4.3 11.1 1.0
C3D X:HEM400 4.3 11.6 1.0
NH2 X:ARG48 4.5 15.4 1.0
CD1 X:TRP51 4.5 12.6 1.0
C26 X:2714001 4.7 11.2 0.7
CZ X:ARG48 4.8 15.9 1.0
CG X:ARG48 4.9 13.0 1.0
CD X:ARG48 4.9 14.1 1.0

Reference:

A.P.Graves, D.M.Shivakumar, S.E.Boyce, M.P.Jacobson, D.A.Case, B.K.Shoichet. Rescoring Docking Hit Lists For Model Cavity Sites: Predictions and Experimental Testing. J.Mol.Biol. V. 377 914 2008.
ISSN: ISSN 0022-2836
PubMed: 18280498
DOI: 10.1016/J.JMB.2008.01.049
Page generated: Sun Aug 4 02:06:38 2024

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