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Iron in PDB 2ux5: X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State

Protein crystallography data

The structure of X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State, PDB code: 2ux5 was solved by J.Koepke, R.Diehm, G.Fritzsch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.21
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 139.460, 139.460, 184.730, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 23.6

Other elements in 2ux5:

The structure of X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State (pdb code 2ux5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State, PDB code: 2ux5:

Iron binding site 1 out of 1 in 2ux5

Go back to Iron Binding Sites List in 2ux5
Iron binding site 1 out of 1 in the X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray High Resolution Structure of the Photosynthetic Reaction Center From Rb. Sphaeroides at pH 9 in the Charge-Separated State within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe1313

b:26.8
occ:1.00
NE2 M:HIS219 1.9 32.1 1.0
NE2 M:HIS266 1.9 27.3 1.0
NE2 L:HIS190 1.9 28.0 1.0
NE2 L:HIS230 2.0 27.3 1.0
OE2 M:GLU234 2.1 30.1 1.0
OE1 M:GLU234 2.1 29.8 1.0
CD M:GLU234 2.5 29.6 1.0
CE1 M:HIS266 2.7 29.4 1.0
CE1 M:HIS219 2.8 32.9 1.0
CE1 L:HIS190 2.8 27.7 1.0
CE1 L:HIS230 2.9 27.7 1.0
CD2 M:HIS219 3.1 33.0 1.0
CD2 L:HIS190 3.1 28.8 1.0
CD2 L:HIS230 3.1 26.8 1.0
CD2 M:HIS266 3.1 28.2 1.0
ND1 M:HIS266 3.9 25.6 1.0
ND1 M:HIS219 4.0 30.2 1.0
ND1 L:HIS190 4.0 27.4 1.0
CG M:GLU234 4.0 29.8 1.0
ND1 L:HIS230 4.0 23.3 1.0
CG M:HIS219 4.1 31.4 1.0
CG L:HIS190 4.1 31.0 1.0
CG M:HIS266 4.2 24.6 1.0
CG L:HIS230 4.2 28.3 1.0
CG1 M:ILE223 4.5 24.7 1.0
CG2 L:VAL194 4.7 30.1 1.0
O M:HOH2100 4.8 38.7 1.0
CB M:GLU234 4.9 28.9 1.0
CD1 M:ILE223 5.0 26.9 1.0

Reference:

J.Koepke, E.M.Krammer, A.R.Klingen, P.Sebban, G.M.Ullmann, G.Fritzsch. pH Modulates the Quinone Position in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides in the Neutral and Charge Separated States. J.Mol.Biol. V. 371 396 2007.
ISSN: ISSN 0022-2836
PubMed: 17570397
DOI: 10.1016/J.JMB.2007.04.082
Page generated: Thu Jul 17 04:04:54 2025

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