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Iron in PDB 2vm0: Crystal Structure of Radiation-Induced Myoglobin Compound II Generated After Annealing of Peroxymyoglobin

Protein crystallography data

The structure of Crystal Structure of Radiation-Induced Myoglobin Compound II Generated After Annealing of Peroxymyoglobin, PDB code: 2vm0 was solved by H.-P.Hersleth, C.H.Gorbitz, K.K.Andersson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.96 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.723, 28.730, 35.383, 90.00, 105.78, 90.00
R / Rfree (%) 16.3 / 19

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Radiation-Induced Myoglobin Compound II Generated After Annealing of Peroxymyoglobin (pdb code 2vm0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Radiation-Induced Myoglobin Compound II Generated After Annealing of Peroxymyoglobin, PDB code: 2vm0:

Iron binding site 1 out of 1 in 2vm0

Go back to Iron Binding Sites List in 2vm0
Iron binding site 1 out of 1 in the Crystal Structure of Radiation-Induced Myoglobin Compound II Generated After Annealing of Peroxymyoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Radiation-Induced Myoglobin Compound II Generated After Annealing of Peroxymyoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1154

b:14.3
occ:1.00
FE A:HEM1154 0.0 14.3 1.0
ND A:HEM1154 2.0 11.7 1.0
O A:OH1155 2.0 16.4 1.0
NA A:HEM1154 2.0 11.9 1.0
NB A:HEM1154 2.1 13.1 1.0
NC A:HEM1154 2.1 12.6 1.0
NE2 A:HIS93 2.1 12.9 1.0
C1D A:HEM1154 3.0 13.5 1.0
C1A A:HEM1154 3.0 13.3 1.0
CE1 A:HIS93 3.1 14.6 1.0
C4D A:HEM1154 3.1 14.8 1.0
C4A A:HEM1154 3.1 13.6 1.0
C1B A:HEM1154 3.1 12.2 1.0
C4C A:HEM1154 3.1 13.5 1.0
C1C A:HEM1154 3.1 11.2 1.0
CD2 A:HIS93 3.1 13.3 1.0
C4B A:HEM1154 3.1 12.7 1.0
CHD A:HEM1154 3.4 12.8 1.0
CHA A:HEM1154 3.4 13.3 1.0
CHB A:HEM1154 3.4 13.1 1.0
CHC A:HEM1154 3.5 12.7 1.0
ND1 A:HIS93 4.2 14.6 1.0
C2D A:HEM1154 4.3 14.3 1.0
CG A:HIS93 4.3 15.9 1.0
C2A A:HEM1154 4.3 12.2 1.0
C3A A:HEM1154 4.3 14.5 1.0
C3D A:HEM1154 4.3 14.8 1.0
C2B A:HEM1154 4.3 13.1 1.0
C3C A:HEM1154 4.3 12.3 1.0
C2C A:HEM1154 4.3 12.3 1.0
C3B A:HEM1154 4.3 11.4 1.0
NE2 A:HIS64 4.4 15.8 1.0
CG2 A:VAL68 4.6 12.2 1.0
CE1 A:HIS64 4.9 16.9 1.0

Reference:

H.-P.Hersleth, Y.Hsiao, U.Ryde, C.H.Gorbitz, K.K.Andersson. The Crystal Structure of Peroxymyoglobin Generated Through Cryoradiolytic Reduction of Myoglobin Compound III During Data Collection. Biochem.J. V. 412 257 2008.
ISSN: ISSN 0264-6021
PubMed: 18215120
DOI: 10.1042/BJ20070921
Page generated: Thu Jul 17 04:27:59 2025

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