Atomistry » Iron » PDB 2vm0-2w3g » 2vnx
Atomistry »
  Iron »
    PDB 2vm0-2w3g »
      2vnx »

Iron in PDB 2vnx: Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays

Enzymatic activity of Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays

All present enzymatic activity of Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays:
1.11.11.1;

Protein crystallography data

The structure of Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays, PDB code: 2vnx was solved by C.L.Metcalfe, S.K.Badyal, E.L.Raven, P.C.E.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.80 / 1.50
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 82.002, 82.002, 75.570, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.9

Other elements in 2vnx:

The structure of Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays also contains other interesting chemical elements:

Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays (pdb code 2vnx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays, PDB code: 2vnx:

Iron binding site 1 out of 1 in 2vnx

Go back to Iron Binding Sites List in 2vnx
Iron binding site 1 out of 1 in the Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Soybean Ascorbate Peroxidase Mutant W41A After Exposure to A High Dose of X-Rays within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe251

b:11.1
occ:1.00
 FE X:HEM251 0.0 11.1 1.0
NC X:HEM251 2.0 9.8 1.0
NA X:HEM251 2.0 9.7 1.0
NB X:HEM251 2.0 9.6 1.0
ND X:HEM251 2.1 8.8 1.0
NE2 X:HIS163 2.1 11.2 1.0
NE2 X:HIS42 2.2 8.1 0.7
CE1 X:HIS42 3.0 9.9 0.7
C4C X:HEM251 3.0 9.7 1.0
C1C X:HEM251 3.0 9.4 1.0
C4B X:HEM251 3.0 10.3 1.0
CD2 X:HIS163 3.0 9.8 1.0
C1D X:HEM251 3.0 9.7 1.0
C4D X:HEM251 3.1 8.7 1.0
C1B X:HEM251 3.1 11.7 1.0
C1A X:HEM251 3.1 9.9 1.0
C4A X:HEM251 3.1 10.9 1.0
CE1 X:HIS163 3.1 11.5 1.0
CD2 X:HIS42 3.4 10.0 0.7
CHD X:HEM251 3.4 9.3 1.0
CHC X:HEM251 3.4 10.5 1.0
CHB X:HEM251 3.4 11.2 1.0
CHA X:HEM251 3.5 9.8 1.0
ND1 X:HIS163 4.2 11.8 1.0
ND1 X:HIS42 4.2 10.4 0.7
CG X:HIS163 4.2 9.8 1.0
C3C X:HEM251 4.2 9.5 1.0
C2C X:HEM251 4.2 9.0 1.0
C3B X:HEM251 4.3 11.0 1.0
C2B X:HEM251 4.3 11.8 1.0
C2D X:HEM251 4.3 8.9 1.0
C3D X:HEM251 4.3 8.1 1.0
C2A X:HEM251 4.3 11.2 1.0
C3A X:HEM251 4.3 11.2 1.0
CG X:HIS42 4.4 10.8 0.7
NE2 X:HIS42 4.8 12.1 0.3
O X:HOH2069 4.8 30.9 1.0

Reference:

S.K.Badyal, C.L.Metcalfe, J.Basran, I.Efimov, P.C.E.Moody, E.L.Raven. Iron Oxidation State Modulates Active Site Structure in A Heme Peroxidase. Biochemistry V. 47 4403 2008.
ISSN: ISSN 0006-2960
PubMed: 18351739
DOI: 10.1021/BI702337N
Page generated: Sun Aug 4 03:04:51 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy