Iron in PDB 2wth: Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form

The structure of Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form, PDB code: 2wth was solved by E.Geuens, D.Hoogewijs, M.Nardini, E.Vinck, A.Pesce, L.Kiger, A.Fago, L.Tilleman, S.De Henau, M.Marden, R.E.Weber, S.Van Doorslaer, J.Vanfleteren, L.Moens, M.Bolognesi, S.Dewilde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.28 / 2.80
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.681, 77.681, 145.640, 90.00, 90.00, 120.00
R / Rfree (%)	26.9 / 31.948

The binding sites of Iron atom in the Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form (pdb code 2wth). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form, PDB code: 2wth:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe160 b:51.1 occ:1.00 FE A:HEM160 0.0 51.1 1.0 NC A:HEM160 2.0 51.8 1.0 ND A:HEM160 2.0 51.6 1.0 NB A:HEM160 2.1 51.7 1.0 NA A:HEM160 2.1 52.9 1.0 NE2 A:HIS101 2.2 54.9 1.0 O2 A:OXY161 2.4 65.6 1.0 O1 A:OXY161 2.9 66.8 1.0 C4C A:HEM160 3.0 51.8 1.0 CE1 A:HIS101 3.0 55.4 1.0 C1D A:HEM160 3.0 52.6 1.0 C1C A:HEM160 3.0 51.5 1.0 C4D A:HEM160 3.1 52.5 1.0 C4B A:HEM160 3.1 51.8 1.0 C1A A:HEM160 3.1 53.4 1.0 C1B A:HEM160 3.1 52.0 1.0 C4A A:HEM160 3.1 53.1 1.0 CD2 A:HIS101 3.3 55.8 1.0 CHD A:HEM160 3.4 52.6 1.0 CHC A:HEM160 3.4 52.1 1.0 CHA A:HEM160 3.5 53.0 1.0 CHB A:HEM160 3.5 52.9 1.0 ND1 A:HIS101 4.2 56.0 1.0 C3C A:HEM160 4.2 52.2 1.0 C2C A:HEM160 4.2 52.2 1.0 C2D A:HEM160 4.3 52.6 1.0 C3D A:HEM160 4.3 52.9 1.0 CG A:HIS101 4.3 56.9 1.0 C3B A:HEM160 4.3 52.2 1.0 C2B A:HEM160 4.3 52.3 1.0 C3A A:HEM160 4.4 53.9 1.0 C2A A:HEM160 4.4 54.6 1.0 CD1 A:ILE73 4.6 47.1 1.0 OH A:TYR35 4.8 52.0 1.0

Iron binding site 2 out of 2 in the Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Low Resolution 3D Structure of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe160 b:52.5 occ:1.00 FE B:HEM160 0.0 52.5 1.0 NE2 B:HIS101 2.0 51.0 1.0 NA B:HEM160 2.1 53.6 1.0 ND B:HEM160 2.1 53.2 1.0 NC B:HEM160 2.1 52.4 1.0 NB B:HEM160 2.1 52.3 1.0 O2 B:OXY161 2.3 65.0 1.0 O1 B:OXY161 2.9 64.9 1.0 CE1 B:HIS101 2.9 51.2 1.0 C1D B:HEM160 3.0 53.8 1.0 C4A B:HEM160 3.1 53.3 1.0 C4C B:HEM160 3.1 51.5 1.0 C1B B:HEM160 3.1 52.5 1.0 C1A B:HEM160 3.1 54.3 1.0 C4D B:HEM160 3.1 54.1 1.0 C1C B:HEM160 3.1 51.9 1.0 C4B B:HEM160 3.1 51.9 1.0 CD2 B:HIS101 3.2 51.7 1.0 CHD B:HEM160 3.4 52.9 1.0 CHB B:HEM160 3.4 53.0 1.0 CHA B:HEM160 3.5 53.9 1.0 CHC B:HEM160 3.5 51.9 1.0 ND1 B:HIS101 4.1 52.1 1.0 CG B:HIS101 4.2 51.9 1.0 C3A B:HEM160 4.3 54.1 1.0 C2A B:HEM160 4.3 54.8 1.0 C3C B:HEM160 4.3 51.3 1.0 C2D B:HEM160 4.3 54.1 1.0 C2B B:HEM160 4.3 51.8 1.0 C2C B:HEM160 4.3 51.3 1.0 C3D B:HEM160 4.3 54.7 1.0 C3B B:HEM160 4.4 51.7 1.0 CD1 B:ILE73 4.5 45.6 1.0

E.Geuens, D.Hoogewijs, M.Nardini, E.Vinck, A.Pesce, L.Kiger, A.Fago, L.Tilleman, S.De Henau, M.Marden, R.E.Weber, S.Van Doorslaer, J.Vanfleteren, L.Moens, M.Bolognesi, S.Dewilde. Globin-Like Proteins in Caenorhabditis Elegans: in Vivo Localization, Ligand Binding and Structural Properties. Bmc Biochem. V. 11 17 2010.
ISSN: ISSN 1471-2091
PubMed: 20361867
DOI: 10.1186/1471-2091-11-17