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Iron in PDB 2z7e: Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster

Protein crystallography data

The structure of Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster, PDB code: 2z7e was solved by Y.Shimomura, K.Wada, Y.Takahashi, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.25 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.903, 122.136, 62.051, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 25.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster (pdb code 2z7e). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster, PDB code: 2z7e:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2z7e

Go back to Iron Binding Sites List in 2z7e
Iron binding site 1 out of 2 in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe158

b:33.5
occ:1.00
FE1 B:FES158 0.0 33.5 1.0
S2 B:FES158 2.2 37.4 1.0
S1 B:FES158 2.2 31.6 1.0
SG B:CYS36 2.2 30.3 1.0
NE2 B:HIS106 2.3 40.2 1.0
CE1 B:HIS106 2.6 43.8 1.0
CB B:CYS36 3.0 28.1 1.0
FE2 B:FES158 3.0 34.5 1.0
CD2 B:HIS106 3.6 40.9 1.0
ND1 B:HIS106 3.8 44.4 1.0
CG B:HIS106 4.3 39.8 1.0
CA B:CYS36 4.4 28.6 1.0
SG B:CYS107 4.5 33.9 1.0
CB B:ALA38 4.6 34.2 1.0
N B:CYS36 4.7 27.1 1.0
CB B:ASN33 4.8 32.5 1.0
CD2 A:LEU10 4.8 36.1 1.0
CG A:GLU7 4.8 33.3 1.0
SG B:CYS63 5.0 34.3 1.0

Iron binding site 2 out of 2 in 2z7e

Go back to Iron Binding Sites List in 2z7e
Iron binding site 2 out of 2 in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe158

b:34.5
occ:1.00
FE2 B:FES158 0.0 34.5 1.0
S1 B:FES158 2.2 31.6 1.0
S2 B:FES158 2.2 37.4 1.0
SG B:CYS107 2.3 33.9 1.0
SG B:CYS63 2.3 34.3 1.0
FE1 B:FES158 3.0 33.5 1.0
CB B:CYS63 3.3 33.5 1.0
CB B:CYS107 3.3 31.9 1.0
CA B:CYS107 3.9 32.7 1.0
O A:HOH179 4.0 43.5 1.0
NE2 B:HIS106 4.1 40.2 1.0
CB B:ALA66 4.5 36.0 1.0
N B:ALA66 4.5 39.3 1.0
CD2 B:HIS106 4.6 40.9 1.0
CE1 B:HIS106 4.6 43.8 1.0
N B:CYS107 4.6 33.6 1.0
CA B:CYS63 4.7 34.1 1.0
CD2 A:LEU10 4.7 36.1 1.0
CE2 A:PHE3 4.7 51.2 1.0
CB B:SER65 4.7 38.0 1.0
CZ A:PHE3 5.0 51.0 1.0

Reference:

Y.Shimomura, K.Wada, K.Fukuyama, Y.Takahashi. The Asymmetric Trimeric Architecture of [2FE-2S] Iscu: Implications For Its Scaffolding During Iron-Sulfur Cluster Biosynthesis J.Mol.Biol. V. 383 133 2008.
ISSN: ISSN 0022-2836
PubMed: 18723024
DOI: 10.1016/J.JMB.2008.08.015
Page generated: Sun Aug 4 05:54:52 2024

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