Atomistry » Iron » PDB 2z5z-2zpg » 2z7e
Atomistry »
  Iron »
    PDB 2z5z-2zpg »
      2z7e »

Iron in PDB 2z7e: Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster

Protein crystallography data

The structure of Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster, PDB code: 2z7e was solved by Y.Shimomura, K.Wada, Y.Takahashi, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.25 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.903, 122.136, 62.051, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 25.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster (pdb code 2z7e). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster, PDB code: 2z7e:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2z7e

Go back to Iron Binding Sites List in 2z7e
Iron binding site 1 out of 2 in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe158

b:33.5
occ:1.00
FE1 B:FES158 0.0 33.5 1.0
S2 B:FES158 2.2 37.4 1.0
S1 B:FES158 2.2 31.6 1.0
SG B:CYS36 2.2 30.3 1.0
NE2 B:HIS106 2.3 40.2 1.0
CE1 B:HIS106 2.6 43.8 1.0
CB B:CYS36 3.0 28.1 1.0
FE2 B:FES158 3.0 34.5 1.0
CD2 B:HIS106 3.6 40.9 1.0
ND1 B:HIS106 3.8 44.4 1.0
CG B:HIS106 4.3 39.8 1.0
CA B:CYS36 4.4 28.6 1.0
SG B:CYS107 4.5 33.9 1.0
CB B:ALA38 4.6 34.2 1.0
N B:CYS36 4.7 27.1 1.0
CB B:ASN33 4.8 32.5 1.0
CD2 A:LEU10 4.8 36.1 1.0
CG A:GLU7 4.8 33.3 1.0
SG B:CYS63 5.0 34.3 1.0

Iron binding site 2 out of 2 in 2z7e

Go back to Iron Binding Sites List in 2z7e
Iron binding site 2 out of 2 in the Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Aquifex Aeolicus Iscu with Bound [2FE- 2S] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe158

b:34.5
occ:1.00
FE2 B:FES158 0.0 34.5 1.0
S1 B:FES158 2.2 31.6 1.0
S2 B:FES158 2.2 37.4 1.0
SG B:CYS107 2.3 33.9 1.0
SG B:CYS63 2.3 34.3 1.0
FE1 B:FES158 3.0 33.5 1.0
CB B:CYS63 3.3 33.5 1.0
CB B:CYS107 3.3 31.9 1.0
CA B:CYS107 3.9 32.7 1.0
O A:HOH179 4.0 43.5 1.0
NE2 B:HIS106 4.1 40.2 1.0
CB B:ALA66 4.5 36.0 1.0
N B:ALA66 4.5 39.3 1.0
CD2 B:HIS106 4.6 40.9 1.0
CE1 B:HIS106 4.6 43.8 1.0
N B:CYS107 4.6 33.6 1.0
CA B:CYS63 4.7 34.1 1.0
CD2 A:LEU10 4.7 36.1 1.0
CE2 A:PHE3 4.7 51.2 1.0
CB B:SER65 4.7 38.0 1.0
CZ A:PHE3 5.0 51.0 1.0

Reference:

Y.Shimomura, K.Wada, K.Fukuyama, Y.Takahashi. The Asymmetric Trimeric Architecture of [2FE-2S] Iscu: Implications For Its Scaffolding During Iron-Sulfur Cluster Biosynthesis J.Mol.Biol. V. 383 133 2008.
ISSN: ISSN 0022-2836
PubMed: 18723024
DOI: 10.1016/J.JMB.2008.08.015
Page generated: Mon Aug 4 22:42:32 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy