Atomistry » Iron » PDB 2zph-3a0b » 2zph
Atomistry »
  Iron »
    PDB 2zph-3a0b »
      2zph »

Iron in PDB 2zph: Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K

Enzymatic activity of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K

All present enzymatic activity of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K:
4.2.1.84;

Protein crystallography data

The structure of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K, PDB code: 2zph was solved by K.Hashimoto, H.Suzuki, K.Taniguchi, T.Noguchi, M.Yohda, M.Odaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.99 / 1.59
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.878, 60.157, 81.408, 90.00, 125.12, 90.00
R / Rfree (%) 15.7 / 18.5

Other elements in 2zph:

The structure of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K (pdb code 2zph). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K, PDB code: 2zph:

Iron binding site 1 out of 1 in 2zph

Go back to Iron Binding Sites List in 2zph
Iron binding site 1 out of 1 in the Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 340MIN at 293K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:6.5
occ:1.00
 N A:CSO114 2.0 5.1 1.0
N A:SER113 2.1 5.3 1.0
C A:TB0301 2.1 5.5 1.0
SG A:CSD112 2.1 6.0 1.0
SG A:CSO114 2.2 10.9 1.0
SG A:CYS109 2.3 6.0 1.0
C A:SER113 2.8 5.0 1.0
CA A:SER113 2.9 5.4 1.0
CA A:CSO114 2.9 6.2 1.0
CB A:CSO114 3.1 6.0 1.0
C A:CSD112 3.1 5.8 1.0
CB A:CSD112 3.1 6.3 1.0
OD2 A:CSD112 3.2 4.6 1.0
OD1 A:CSD112 3.2 6.7 1.0
OD A:CSO114 3.2 12.5 0.7
CB A:CYS109 3.3 6.0 1.0
CA A:CSD112 3.5 5.3 1.0
O A:HOH604 3.6 11.7 0.3
OG A:SER113 3.8 8.4 1.0
N A:CSD112 3.9 5.4 1.0
CB A:SER113 4.0 5.9 1.0
O A:SER113 4.0 5.8 1.0
N A:TB0301 4.0 23.9 0.8
O A:CSD112 4.2 5.4 1.0
C A:CSO114 4.3 5.9 1.0
NH2 B:ARG141 4.7 6.7 1.0
O A:CSO114 4.7 5.4 1.0
CA A:CYS109 4.8 5.5 1.0
C A:LEU111 4.9 5.0 1.0
O A:CYS109 4.9 6.5 1.0
O A:HOH654 4.9 13.6 1.0
O A:THR162 4.9 8.6 1.0

Reference:

K.Hashimoto, H.Suzuki, K.Taniguchi, T.Noguchi, M.Yohda, M.Odaka. Catalytic Mechanism of Nitrile Hydratase Proposed By Time-Resolved X-Ray Crystallography Using A Novel Substrate, Tert-Butylisonitrile J.Biol.Chem. V. 283 36617 2008.
ISSN: ISSN 0021-9258
PubMed: 18948265
DOI: 10.1074/JBC.M806577200
Page generated: Mon Aug 4 22:54:32 2025

Last articles

Mg in 6Z9I
Mg in 6Z9H
Mg in 6Z9A
Mg in 6Z8I
Mg in 6Z8K
Mg in 6Z7T
Mg in 6Z7Z
Mg in 6Z6U
Mg in 6Z6G
Mg in 6Z69
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy