Iron in PDB 2zzs: Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
Protein crystallography data
The structure of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633, PDB code: 2zzs
was solved by
H.Akazaki,
F.Kawai,
Y.Kumaki,
K.Sekine,
W.Hakamata,
T.Nishio,
S.-Y.Park,
T.Oku,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
1.80
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
84.949,
87.612,
103.847,
71.50,
72.98,
83.68
|
|
R / Rfree (%)
|
19.3 /
24.2
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
32;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
(pdb code 2zzs). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the
Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633, PDB code: 2zzs:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 1 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe220
b:12.1
occ:1.00
|
FE
|
A:HEC220
|
0.0
|
12.1
|
1.0
|
|
NB
|
A:HEC220
|
1.9
|
10.0
|
1.0
|
|
ND
|
A:HEC220
|
1.9
|
9.5
|
1.0
|
|
NE2
|
A:HIS38
|
2.0
|
12.8
|
1.0
|
|
NA
|
A:HEC220
|
2.1
|
7.4
|
1.0
|
|
NC
|
A:HEC220
|
2.1
|
8.5
|
1.0
|
|
SD
|
A:MET80
|
2.3
|
13.2
|
1.0
|
|
CE1
|
A:HIS38
|
2.9
|
12.1
|
1.0
|
|
C1B
|
A:HEC220
|
3.0
|
9.8
|
1.0
|
|
C4A
|
A:HEC220
|
3.0
|
11.1
|
1.0
|
|
C4D
|
A:HEC220
|
3.0
|
9.5
|
1.0
|
|
C4C
|
A:HEC220
|
3.0
|
11.5
|
1.0
|
|
C1D
|
A:HEC220
|
3.0
|
13.5
|
1.0
|
|
C4B
|
A:HEC220
|
3.0
|
9.3
|
1.0
|
|
C1C
|
A:HEC220
|
3.1
|
13.5
|
1.0
|
|
CD2
|
A:HIS38
|
3.1
|
13.4
|
1.0
|
|
C1A
|
A:HEC220
|
3.1
|
12.7
|
1.0
|
|
CG
|
A:MET80
|
3.3
|
11.2
|
1.0
|
|
CE
|
A:MET80
|
3.3
|
14.2
|
1.0
|
|
CHB
|
A:HEC220
|
3.3
|
14.7
|
1.0
|
|
CHD
|
A:HEC220
|
3.4
|
14.7
|
1.0
|
|
CHC
|
A:HEC220
|
3.5
|
12.4
|
1.0
|
|
CHA
|
A:HEC220
|
3.5
|
10.6
|
1.0
|
|
ND1
|
A:HIS38
|
4.1
|
14.6
|
1.0
|
|
CG
|
A:HIS38
|
4.2
|
15.3
|
1.0
|
|
C2B
|
A:HEC220
|
4.2
|
11.6
|
1.0
|
|
C3A
|
A:HEC220
|
4.3
|
8.2
|
1.0
|
|
C2D
|
A:HEC220
|
4.3
|
13.7
|
1.0
|
|
C3B
|
A:HEC220
|
4.3
|
11.9
|
1.0
|
|
C3D
|
A:HEC220
|
4.3
|
12.6
|
1.0
|
|
C2C
|
A:HEC220
|
4.3
|
10.1
|
1.0
|
|
C3C
|
A:HEC220
|
4.3
|
10.4
|
1.0
|
|
C2A
|
A:HEC220
|
4.3
|
9.4
|
1.0
|
|
CB
|
A:MET80
|
4.7
|
12.8
|
1.0
|
|
Iron binding site 2 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 2 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe220
b:11.5
occ:1.00
|
FE
|
B:HEC220
|
0.0
|
11.5
|
1.0
|
|
NB
|
B:HEC220
|
1.9
|
10.1
|
1.0
|
|
NE2
|
B:HIS38
|
2.0
|
15.2
|
1.0
|
|
ND
|
B:HEC220
|
2.0
|
10.1
|
1.0
|
|
NC
|
B:HEC220
|
2.1
|
12.0
|
1.0
|
|
NA
|
B:HEC220
|
2.1
|
10.4
|
1.0
|
|
SD
|
B:MET80
|
2.3
|
13.3
|
1.0
|
|
CE1
|
B:HIS38
|
2.9
|
12.2
|
1.0
|
|
C1B
|
B:HEC220
|
3.0
|
13.3
|
1.0
|
|
CD2
|
B:HIS38
|
3.0
|
13.1
|
1.0
|
|
C4B
|
B:HEC220
|
3.0
|
12.7
|
1.0
|
|
C4A
|
B:HEC220
|
3.0
|
11.6
|
1.0
|
|
C4D
|
B:HEC220
|
3.0
|
12.1
|
1.0
|
|
C1D
|
B:HEC220
|
3.1
|
10.4
|
1.0
|
|
C4C
|
B:HEC220
|
3.1
|
10.5
|
1.0
|
|
C1C
|
B:HEC220
|
3.1
|
13.3
|
1.0
|
|
C1A
|
B:HEC220
|
3.1
|
13.6
|
1.0
|
|
CG
|
B:MET80
|
3.4
|
12.4
|
1.0
|
|
CHB
|
B:HEC220
|
3.4
|
10.5
|
1.0
|
|
CHD
|
B:HEC220
|
3.4
|
8.9
|
1.0
|
|
CHC
|
B:HEC220
|
3.4
|
12.8
|
1.0
|
|
CHA
|
B:HEC220
|
3.4
|
13.0
|
1.0
|
|
CE
|
B:MET80
|
3.5
|
13.3
|
1.0
|
|
ND1
|
B:HIS38
|
4.1
|
14.0
|
1.0
|
|
CG
|
B:HIS38
|
4.1
|
13.2
|
1.0
|
|
CB
|
B:MET80
|
4.2
|
14.2
|
1.0
|
|
C2B
|
B:HEC220
|
4.3
|
15.8
|
1.0
|
|
C3B
|
B:HEC220
|
4.3
|
14.5
|
1.0
|
|
C3D
|
B:HEC220
|
4.3
|
12.2
|
1.0
|
|
C3A
|
B:HEC220
|
4.3
|
9.9
|
1.0
|
|
C2D
|
B:HEC220
|
4.3
|
11.8
|
1.0
|
|
C2C
|
B:HEC220
|
4.3
|
10.3
|
1.0
|
|
C2A
|
B:HEC220
|
4.3
|
9.2
|
1.0
|
|
C3C
|
B:HEC220
|
4.3
|
11.2
|
1.0
|
|
CA
|
B:MET80
|
5.0
|
12.8
|
1.0
|
|
Iron binding site 3 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 3 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe220
b:13.7
occ:1.00
|
FE
|
C:HEC220
|
0.0
|
13.7
|
1.0
|
|
NB
|
C:HEC220
|
2.0
|
13.7
|
1.0
|
|
NA
|
C:HEC220
|
2.0
|
10.4
|
1.0
|
|
NE2
|
C:HIS38
|
2.0
|
15.3
|
1.0
|
|
NC
|
C:HEC220
|
2.0
|
11.8
|
1.0
|
|
ND
|
C:HEC220
|
2.1
|
10.0
|
1.0
|
|
SD
|
C:MET80
|
2.3
|
13.8
|
1.0
|
|
C1B
|
C:HEC220
|
3.0
|
16.4
|
1.0
|
|
C4A
|
C:HEC220
|
3.0
|
11.2
|
1.0
|
|
CD2
|
C:HIS38
|
3.0
|
16.8
|
1.0
|
|
C4C
|
C:HEC220
|
3.0
|
14.0
|
1.0
|
|
CE1
|
C:HIS38
|
3.0
|
15.8
|
1.0
|
|
C4B
|
C:HEC220
|
3.0
|
14.5
|
1.0
|
|
C1A
|
C:HEC220
|
3.0
|
12.7
|
1.0
|
|
C4D
|
C:HEC220
|
3.1
|
9.9
|
1.0
|
|
C1D
|
C:HEC220
|
3.1
|
14.9
|
1.0
|
|
C1C
|
C:HEC220
|
3.1
|
14.7
|
1.0
|
|
CE
|
C:MET80
|
3.2
|
14.2
|
1.0
|
|
CHB
|
C:HEC220
|
3.3
|
15.6
|
1.0
|
|
CHD
|
C:HEC220
|
3.4
|
13.5
|
1.0
|
|
CHA
|
C:HEC220
|
3.4
|
13.8
|
1.0
|
|
CHC
|
C:HEC220
|
3.4
|
15.2
|
1.0
|
|
CG
|
C:MET80
|
3.4
|
14.5
|
1.0
|
|
ND1
|
C:HIS38
|
4.1
|
17.9
|
1.0
|
|
CG
|
C:HIS38
|
4.1
|
17.5
|
1.0
|
|
C2B
|
C:HEC220
|
4.2
|
14.9
|
1.0
|
|
C3A
|
C:HEC220
|
4.2
|
11.5
|
1.0
|
|
C2A
|
C:HEC220
|
4.3
|
11.0
|
1.0
|
|
CB
|
C:MET80
|
4.3
|
13.9
|
1.0
|
|
C3B
|
C:HEC220
|
4.3
|
16.8
|
1.0
|
|
C3C
|
C:HEC220
|
4.3
|
11.8
|
1.0
|
|
C3D
|
C:HEC220
|
4.3
|
14.9
|
1.0
|
|
C2C
|
C:HEC220
|
4.3
|
13.0
|
1.0
|
|
C2D
|
C:HEC220
|
4.3
|
13.6
|
1.0
|
|
CA
|
C:MET80
|
5.0
|
14.3
|
1.0
|
|
Iron binding site 4 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 4 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe220
b:15.3
occ:1.00
|
FE
|
D:HEC220
|
0.0
|
15.3
|
1.0
|
|
NE2
|
D:HIS38
|
2.0
|
18.9
|
1.0
|
|
NC
|
D:HEC220
|
2.0
|
13.7
|
1.0
|
|
NA
|
D:HEC220
|
2.0
|
15.2
|
1.0
|
|
NB
|
D:HEC220
|
2.0
|
13.8
|
1.0
|
|
ND
|
D:HEC220
|
2.1
|
14.9
|
1.0
|
|
SD
|
D:MET80
|
2.4
|
17.2
|
1.0
|
|
CD2
|
D:HIS38
|
2.9
|
17.5
|
1.0
|
|
CE1
|
D:HIS38
|
3.0
|
18.9
|
1.0
|
|
C4C
|
D:HEC220
|
3.0
|
13.9
|
1.0
|
|
C1C
|
D:HEC220
|
3.0
|
17.4
|
1.0
|
|
C4A
|
D:HEC220
|
3.0
|
13.1
|
1.0
|
|
C4B
|
D:HEC220
|
3.0
|
17.7
|
1.0
|
|
C1A
|
D:HEC220
|
3.1
|
15.5
|
1.0
|
|
C1B
|
D:HEC220
|
3.1
|
15.7
|
1.0
|
|
C1D
|
D:HEC220
|
3.1
|
15.3
|
1.0
|
|
C4D
|
D:HEC220
|
3.1
|
15.8
|
1.0
|
|
CHC
|
D:HEC220
|
3.4
|
17.9
|
1.0
|
|
CE
|
D:MET80
|
3.4
|
19.5
|
1.0
|
|
CHB
|
D:HEC220
|
3.4
|
15.8
|
1.0
|
|
CHD
|
D:HEC220
|
3.4
|
13.5
|
1.0
|
|
CG
|
D:MET80
|
3.4
|
17.4
|
1.0
|
|
CHA
|
D:HEC220
|
3.5
|
15.9
|
1.0
|
|
ND1
|
D:HIS38
|
4.1
|
15.1
|
1.0
|
|
CG
|
D:HIS38
|
4.1
|
18.3
|
1.0
|
|
CB
|
D:MET80
|
4.2
|
16.5
|
1.0
|
|
C2C
|
D:HEC220
|
4.2
|
14.6
|
1.0
|
|
C3C
|
D:HEC220
|
4.3
|
14.2
|
1.0
|
|
C3A
|
D:HEC220
|
4.3
|
15.2
|
1.0
|
|
C3B
|
D:HEC220
|
4.3
|
17.1
|
1.0
|
|
C2B
|
D:HEC220
|
4.3
|
18.1
|
1.0
|
|
C2A
|
D:HEC220
|
4.3
|
12.9
|
1.0
|
|
C2D
|
D:HEC220
|
4.3
|
15.4
|
1.0
|
|
C3D
|
D:HEC220
|
4.3
|
13.2
|
1.0
|
|
CA
|
D:MET80
|
4.9
|
17.2
|
1.0
|
|
Iron binding site 5 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 5 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe220
b:11.5
occ:1.00
|
FE
|
E:HEC220
|
0.0
|
11.5
|
1.0
|
|
NB
|
E:HEC220
|
2.0
|
10.1
|
1.0
|
|
ND
|
E:HEC220
|
2.0
|
9.8
|
1.0
|
|
NE2
|
E:HIS38
|
2.0
|
16.2
|
1.0
|
|
NA
|
E:HEC220
|
2.1
|
10.0
|
1.0
|
|
NC
|
E:HEC220
|
2.1
|
11.4
|
1.0
|
|
SD
|
E:MET80
|
2.3
|
13.6
|
1.0
|
|
CE1
|
E:HIS38
|
3.0
|
16.4
|
1.0
|
|
C1B
|
E:HEC220
|
3.0
|
12.0
|
1.0
|
|
C4D
|
E:HEC220
|
3.0
|
10.1
|
1.0
|
|
C4B
|
E:HEC220
|
3.0
|
11.5
|
1.0
|
|
C4A
|
E:HEC220
|
3.0
|
7.7
|
1.0
|
|
C1D
|
E:HEC220
|
3.0
|
13.5
|
1.0
|
|
C1C
|
E:HEC220
|
3.1
|
12.6
|
1.0
|
|
C1A
|
E:HEC220
|
3.1
|
10.3
|
1.0
|
|
CD2
|
E:HIS38
|
3.1
|
12.2
|
1.0
|
|
C4C
|
E:HEC220
|
3.1
|
11.5
|
1.0
|
|
CE
|
E:MET80
|
3.3
|
15.8
|
1.0
|
|
CG
|
E:MET80
|
3.4
|
16.3
|
1.0
|
|
CHB
|
E:HEC220
|
3.4
|
12.4
|
1.0
|
|
CHC
|
E:HEC220
|
3.4
|
13.7
|
1.0
|
|
CHD
|
E:HEC220
|
3.5
|
14.4
|
1.0
|
|
CHA
|
E:HEC220
|
3.5
|
10.7
|
1.0
|
|
ND1
|
E:HIS38
|
4.1
|
17.1
|
1.0
|
|
CG
|
E:HIS38
|
4.2
|
14.7
|
1.0
|
|
C2B
|
E:HEC220
|
4.2
|
12.8
|
1.0
|
|
C3B
|
E:HEC220
|
4.3
|
13.8
|
1.0
|
|
C2D
|
E:HEC220
|
4.3
|
11.9
|
1.0
|
|
C3A
|
E:HEC220
|
4.3
|
9.3
|
1.0
|
|
C3D
|
E:HEC220
|
4.3
|
11.4
|
1.0
|
|
C2A
|
E:HEC220
|
4.3
|
8.5
|
1.0
|
|
CB
|
E:MET80
|
4.3
|
14.5
|
1.0
|
|
C2C
|
E:HEC220
|
4.3
|
10.2
|
1.0
|
|
C3C
|
E:HEC220
|
4.3
|
12.3
|
1.0
|
|
Iron binding site 6 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 6 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe220
b:12.9
occ:1.00
|
FE
|
F:HEC220
|
0.0
|
12.9
|
1.0
|
|
NB
|
F:HEC220
|
2.0
|
12.1
|
1.0
|
|
ND
|
F:HEC220
|
2.0
|
12.6
|
1.0
|
|
NE2
|
F:HIS38
|
2.1
|
18.6
|
1.0
|
|
NC
|
F:HEC220
|
2.1
|
13.4
|
1.0
|
|
NA
|
F:HEC220
|
2.1
|
8.9
|
1.0
|
|
SD
|
F:MET80
|
2.3
|
13.0
|
1.0
|
|
CD2
|
F:HIS38
|
3.0
|
17.6
|
1.0
|
|
C4B
|
F:HEC220
|
3.0
|
14.0
|
1.0
|
|
C4A
|
F:HEC220
|
3.0
|
9.3
|
1.0
|
|
C1B
|
F:HEC220
|
3.0
|
11.6
|
1.0
|
|
C4D
|
F:HEC220
|
3.0
|
11.8
|
1.0
|
|
C4C
|
F:HEC220
|
3.1
|
13.2
|
1.0
|
|
C1C
|
F:HEC220
|
3.1
|
15.1
|
1.0
|
|
C1D
|
F:HEC220
|
3.1
|
13.7
|
1.0
|
|
C1A
|
F:HEC220
|
3.1
|
11.8
|
1.0
|
|
CE1
|
F:HIS38
|
3.1
|
17.7
|
1.0
|
|
CE
|
F:MET80
|
3.2
|
12.8
|
1.0
|
|
CHC
|
F:HEC220
|
3.4
|
15.9
|
1.0
|
|
CHB
|
F:HEC220
|
3.4
|
10.2
|
1.0
|
|
CG
|
F:MET80
|
3.4
|
10.3
|
1.0
|
|
CHA
|
F:HEC220
|
3.5
|
11.7
|
1.0
|
|
CHD
|
F:HEC220
|
3.5
|
10.2
|
1.0
|
|
CG
|
F:HIS38
|
4.2
|
19.1
|
1.0
|
|
ND1
|
F:HIS38
|
4.2
|
14.8
|
1.0
|
|
CB
|
F:MET80
|
4.3
|
13.9
|
1.0
|
|
C2B
|
F:HEC220
|
4.3
|
13.9
|
1.0
|
|
C3B
|
F:HEC220
|
4.3
|
14.8
|
1.0
|
|
C3A
|
F:HEC220
|
4.3
|
7.1
|
1.0
|
|
C3C
|
F:HEC220
|
4.3
|
13.6
|
1.0
|
|
C3D
|
F:HEC220
|
4.3
|
13.7
|
1.0
|
|
C2C
|
F:HEC220
|
4.3
|
15.6
|
1.0
|
|
C2A
|
F:HEC220
|
4.3
|
9.7
|
1.0
|
|
C2D
|
F:HEC220
|
4.3
|
11.9
|
1.0
|
|
CA
|
F:MET80
|
5.0
|
12.2
|
1.0
|
|
Iron binding site 7 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 7 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe220
b:15.7
occ:1.00
|
FE
|
G:HEC220
|
0.0
|
15.7
|
1.0
|
|
NE2
|
G:HIS38
|
2.0
|
17.8
|
1.0
|
|
NB
|
G:HEC220
|
2.0
|
16.3
|
1.0
|
|
ND
|
G:HEC220
|
2.0
|
16.5
|
1.0
|
|
NC
|
G:HEC220
|
2.1
|
12.6
|
1.0
|
|
NA
|
G:HEC220
|
2.1
|
14.2
|
1.0
|
|
SD
|
G:MET80
|
2.4
|
17.2
|
1.0
|
|
CE1
|
G:HIS38
|
3.0
|
16.8
|
1.0
|
|
CD2
|
G:HIS38
|
3.0
|
16.0
|
1.0
|
|
C4B
|
G:HEC220
|
3.0
|
17.3
|
1.0
|
|
C4A
|
G:HEC220
|
3.1
|
16.1
|
1.0
|
|
C4D
|
G:HEC220
|
3.1
|
16.3
|
1.0
|
|
C1B
|
G:HEC220
|
3.1
|
16.5
|
1.0
|
|
C1D
|
G:HEC220
|
3.1
|
14.4
|
1.0
|
|
C4C
|
G:HEC220
|
3.1
|
14.3
|
1.0
|
|
C1A
|
G:HEC220
|
3.1
|
14.6
|
1.0
|
|
C1C
|
G:HEC220
|
3.1
|
17.0
|
1.0
|
|
CE
|
G:MET80
|
3.3
|
16.4
|
1.0
|
|
CG
|
G:MET80
|
3.4
|
13.7
|
1.0
|
|
CHC
|
G:HEC220
|
3.4
|
16.9
|
1.0
|
|
CHA
|
G:HEC220
|
3.4
|
16.4
|
1.0
|
|
CHD
|
G:HEC220
|
3.5
|
15.3
|
1.0
|
|
CHB
|
G:HEC220
|
3.5
|
14.5
|
1.0
|
|
ND1
|
G:HIS38
|
4.1
|
16.7
|
1.0
|
|
CG
|
G:HIS38
|
4.2
|
16.1
|
1.0
|
|
CB
|
G:MET80
|
4.2
|
15.7
|
1.0
|
|
C2B
|
G:HEC220
|
4.3
|
18.1
|
1.0
|
|
C3B
|
G:HEC220
|
4.3
|
18.1
|
1.0
|
|
C2D
|
G:HEC220
|
4.3
|
16.2
|
1.0
|
|
C3A
|
G:HEC220
|
4.3
|
12.3
|
1.0
|
|
C2A
|
G:HEC220
|
4.3
|
15.2
|
1.0
|
|
C3D
|
G:HEC220
|
4.3
|
16.4
|
1.0
|
|
C3C
|
G:HEC220
|
4.3
|
12.4
|
1.0
|
|
C2C
|
G:HEC220
|
4.3
|
12.5
|
1.0
|
|
CA
|
G:MET80
|
5.0
|
13.8
|
1.0
|
|
Iron binding site 8 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 8 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe220
b:14.6
occ:1.00
|
FE
|
H:HEC220
|
0.0
|
14.6
|
1.0
|
|
NE2
|
H:HIS38
|
2.0
|
15.7
|
1.0
|
|
NB
|
H:HEC220
|
2.0
|
11.8
|
1.0
|
|
ND
|
H:HEC220
|
2.0
|
12.8
|
1.0
|
|
NA
|
H:HEC220
|
2.0
|
11.2
|
1.0
|
|
NC
|
H:HEC220
|
2.1
|
15.8
|
1.0
|
|
SD
|
H:MET80
|
2.3
|
16.0
|
1.0
|
|
CE1
|
H:HIS38
|
2.9
|
15.8
|
1.0
|
|
C1B
|
H:HEC220
|
3.0
|
14.3
|
1.0
|
|
C4A
|
H:HEC220
|
3.0
|
11.2
|
1.0
|
|
C4B
|
H:HEC220
|
3.0
|
13.1
|
1.0
|
|
CD2
|
H:HIS38
|
3.0
|
16.4
|
1.0
|
|
C4D
|
H:HEC220
|
3.0
|
13.1
|
1.0
|
|
C1D
|
H:HEC220
|
3.0
|
16.1
|
1.0
|
|
C4C
|
H:HEC220
|
3.1
|
17.5
|
1.0
|
|
C1C
|
H:HEC220
|
3.1
|
15.9
|
1.0
|
|
C1A
|
H:HEC220
|
3.1
|
13.8
|
1.0
|
|
CHB
|
H:HEC220
|
3.3
|
12.2
|
1.0
|
|
CG
|
H:MET80
|
3.4
|
18.5
|
1.0
|
|
CE
|
H:MET80
|
3.4
|
18.0
|
1.0
|
|
CHC
|
H:HEC220
|
3.4
|
12.7
|
1.0
|
|
CHD
|
H:HEC220
|
3.5
|
13.5
|
1.0
|
|
CHA
|
H:HEC220
|
3.5
|
13.2
|
1.0
|
|
ND1
|
H:HIS38
|
4.0
|
17.6
|
1.0
|
|
CG
|
H:HIS38
|
4.1
|
20.8
|
1.0
|
|
C2B
|
H:HEC220
|
4.2
|
14.9
|
1.0
|
|
C3A
|
H:HEC220
|
4.2
|
13.6
|
1.0
|
|
C3B
|
H:HEC220
|
4.2
|
14.9
|
1.0
|
|
C2D
|
H:HEC220
|
4.3
|
15.4
|
1.0
|
|
C2A
|
H:HEC220
|
4.3
|
12.1
|
1.0
|
|
C3D
|
H:HEC220
|
4.3
|
15.7
|
1.0
|
|
C3C
|
H:HEC220
|
4.3
|
18.3
|
1.0
|
|
C2C
|
H:HEC220
|
4.3
|
16.6
|
1.0
|
|
CB
|
H:MET80
|
4.8
|
16.0
|
1.0
|
|
Iron binding site 9 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 9 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe220
b:18.1
occ:1.00
|
FE
|
I:HEC220
|
0.0
|
18.1
|
1.0
|
|
NC
|
I:HEC220
|
1.9
|
15.0
|
1.0
|
|
NB
|
I:HEC220
|
2.0
|
16.1
|
1.0
|
|
NE2
|
I:HIS38
|
2.0
|
18.2
|
1.0
|
|
NA
|
I:HEC220
|
2.1
|
16.4
|
1.0
|
|
ND
|
I:HEC220
|
2.1
|
15.0
|
1.0
|
|
SD
|
I:MET80
|
2.4
|
17.8
|
1.0
|
|
C4C
|
I:HEC220
|
2.9
|
19.6
|
1.0
|
|
C1B
|
I:HEC220
|
2.9
|
17.2
|
1.0
|
|
CE1
|
I:HIS38
|
3.0
|
17.6
|
1.0
|
|
CD2
|
I:HIS38
|
3.1
|
19.2
|
1.0
|
|
C4A
|
I:HEC220
|
3.1
|
15.9
|
1.0
|
|
C1C
|
I:HEC220
|
3.1
|
17.8
|
1.0
|
|
C1D
|
I:HEC220
|
3.1
|
15.5
|
1.0
|
|
C4B
|
I:HEC220
|
3.1
|
15.6
|
1.0
|
|
C1A
|
I:HEC220
|
3.1
|
16.5
|
1.0
|
|
C4D
|
I:HEC220
|
3.1
|
16.6
|
1.0
|
|
CHB
|
I:HEC220
|
3.3
|
14.7
|
1.0
|
|
CE
|
I:MET80
|
3.3
|
15.0
|
1.0
|
|
CHD
|
I:HEC220
|
3.3
|
13.1
|
1.0
|
|
CG
|
I:MET80
|
3.4
|
16.8
|
1.0
|
|
CHA
|
I:HEC220
|
3.5
|
17.1
|
1.0
|
|
CHC
|
I:HEC220
|
3.5
|
17.4
|
1.0
|
|
ND1
|
I:HIS38
|
4.1
|
17.9
|
1.0
|
|
CG
|
I:HIS38
|
4.2
|
16.6
|
1.0
|
|
C3C
|
I:HEC220
|
4.2
|
17.8
|
1.0
|
|
C2B
|
I:HEC220
|
4.2
|
15.5
|
1.0
|
|
C2C
|
I:HEC220
|
4.2
|
17.3
|
1.0
|
|
C3B
|
I:HEC220
|
4.3
|
16.8
|
1.0
|
|
C3A
|
I:HEC220
|
4.3
|
15.0
|
1.0
|
|
CB
|
I:MET80
|
4.3
|
19.2
|
1.0
|
|
C2A
|
I:HEC220
|
4.3
|
16.2
|
1.0
|
|
C2D
|
I:HEC220
|
4.3
|
16.4
|
1.0
|
|
C3D
|
I:HEC220
|
4.4
|
18.0
|
1.0
|
|
CA
|
I:MET80
|
5.0
|
18.6
|
1.0
|
|
Iron binding site 10 out
of 32 in 2zzs
Go back to
Iron Binding Sites List in 2zzs
Iron binding site 10 out
of 32 in the Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe220
b:22.1
occ:1.00
|
FE
|
J:HEC220
|
0.0
|
22.1
|
1.0
|
|
NA
|
J:HEC220
|
1.9
|
11.5
|
1.0
|
|
NB
|
J:HEC220
|
2.0
|
22.2
|
1.0
|
|
NE2
|
J:HIS38
|
2.0
|
26.8
|
1.0
|
|
ND
|
J:HEC220
|
2.1
|
17.3
|
1.0
|
|
NC
|
J:HEC220
|
2.1
|
18.4
|
1.0
|
|
SD
|
J:MET80
|
2.4
|
25.3
|
1.0
|
|
CE1
|
J:HIS38
|
2.9
|
25.1
|
1.0
|
|
C1A
|
J:HEC220
|
2.9
|
19.8
|
1.0
|
|
C4B
|
J:HEC220
|
3.0
|
22.5
|
1.0
|
|
C4D
|
J:HEC220
|
3.0
|
21.4
|
1.0
|
|
C1C
|
J:HEC220
|
3.0
|
20.7
|
1.0
|
|
C4A
|
J:HEC220
|
3.1
|
16.7
|
1.0
|
|
C1B
|
J:HEC220
|
3.1
|
21.4
|
1.0
|
|
C1D
|
J:HEC220
|
3.1
|
21.3
|
1.0
|
|
CD2
|
J:HIS38
|
3.2
|
27.4
|
1.0
|
|
C4C
|
J:HEC220
|
3.2
|
21.3
|
1.0
|
|
CE
|
J:MET80
|
3.3
|
22.8
|
1.0
|
|
CHC
|
J:HEC220
|
3.3
|
21.4
|
1.0
|
|
CHA
|
J:HEC220
|
3.3
|
20.2
|
1.0
|
|
CG
|
J:MET80
|
3.5
|
23.3
|
1.0
|
|
CHB
|
J:HEC220
|
3.5
|
19.9
|
1.0
|
|
CHD
|
J:HEC220
|
3.6
|
20.2
|
1.0
|
|
ND1
|
J:HIS38
|
4.1
|
25.0
|
1.0
|
|
C2A
|
J:HEC220
|
4.2
|
17.7
|
1.0
|
|
CG
|
J:HIS38
|
4.2
|
28.1
|
1.0
|
|
C3B
|
J:HEC220
|
4.2
|
24.2
|
1.0
|
|
C3A
|
J:HEC220
|
4.2
|
16.6
|
1.0
|
|
C2B
|
J:HEC220
|
4.2
|
22.8
|
1.0
|
|
CB
|
J:MET80
|
4.3
|
27.0
|
1.0
|
|
C2C
|
J:HEC220
|
4.3
|
20.9
|
1.0
|
|
C3D
|
J:HEC220
|
4.3
|
20.5
|
1.0
|
|
C2D
|
J:HEC220
|
4.4
|
20.4
|
1.0
|
|
C3C
|
J:HEC220
|
4.4
|
21.4
|
1.0
|
|
Reference:
H.Akazaki,
F.Kawai,
Y.Kumaki,
K.Sekine,
W.Hakamata,
T.Nishio,
S.-Y.Park,
T.Oku.
Crystal Structure of Cytochrome C554 From Vibrio Parahaemolyticus Strain RIMD2210633 To Be Published.
Page generated: Mon Aug 4 22:58:58 2025
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