Iron in PDB 3e6s: Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries

All present enzymatic activity of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries:
1.16.3.1;

The structure of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries, PDB code: 3e6s was solved by M.E.P.Murphy, A.L.Arrieta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.22 / 1.95
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	125.625, 125.625, 170.132, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 20.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 27;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries (pdb code 3e6s). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 27 binding sites of Iron where determined in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries, PDB code: 3e6s:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe200 b:32.7 occ:1.00 OE2 A:GLU48 1.9 38.7 1.0 O A:HOH355 2.1 32.5 1.0 O A:HOH354 2.1 34.5 1.0 OE2 A:GLU94 2.2 24.8 1.0 OE1 A:GLU44 2.3 33.4 1.0 OE1 A:GLU130 2.4 45.1 1.0 OE2 A:GLU130 2.6 42.5 1.0 CD A:GLU130 2.8 41.9 1.0 CD A:GLU94 3.1 27.2 1.0 CD A:GLU48 3.2 32.9 1.0 O A:HOH286 3.4 51.6 1.0 CD A:GLU44 3.4 32.4 1.0 OE1 A:GLU94 3.4 26.3 1.0 FE A:FE201 3.7 39.1 0.6 OE2 A:GLU44 3.9 38.2 1.0 OE1 A:GLU48 3.9 36.8 1.0 OH A:TYR22 4.0 22.2 1.0 CG A:GLU48 4.1 26.6 1.0 CE1 A:TYR22 4.2 19.8 1.0 CG A:GLU130 4.3 34.9 1.0 CG A:GLU94 4.4 24.0 1.0 CZ A:TYR22 4.4 22.1 1.0 O A:HOH227 4.5 36.1 1.0 OE1 A:GLN127 4.7 25.9 1.0 CG A:GLU44 4.7 25.9 1.0 ND2 A:ASN97 4.7 24.0 0.5 CB A:GLU130 4.9 28.9 1.0 O A:HOH346 4.9 52.0 1.0

Iron binding site 2 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:39.1 occ:0.60 OE2 A:GLU44 2.0 38.2 1.0 O A:HOH281 2.3 45.6 1.0 O A:HOH346 2.4 52.0 1.0 O A:HOH355 2.6 32.5 1.0 OE1 A:GLU47 2.9 45.1 1.0 CD A:GLU44 2.9 32.4 1.0 OE1 A:GLU130 3.0 45.1 1.0 CD A:GLU130 3.1 41.9 1.0 OE1 A:GLU44 3.2 33.4 1.0 FE A:FE202 3.3 38.6 0.4 CD A:GLU47 3.3 43.4 1.0 OE2 A:GLU130 3.5 42.5 1.0 O A:HOH286 3.5 51.6 1.0 FE A:FE200 3.7 32.7 1.0 CG A:GLU130 3.7 34.9 1.0 OE2 A:GLU47 3.9 50.4 1.0 CG A:GLU47 3.9 33.1 1.0 CG A:GLU44 4.3 25.9 1.0 NE2 A:GLN126 4.4 42.0 1.0 CB A:GLU47 4.6 23.3 1.0 O A:HOH354 5.0 34.5 1.0

Iron binding site 3 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:38.6 occ:0.40 O A:HOH346 2.2 52.0 1.0 O A:HOH281 2.4 45.6 1.0 OE2 A:GLU47 2.6 50.4 1.0 OE1 A:GLU47 2.7 45.1 1.0 CD A:GLU47 2.9 43.4 1.0 FE A:FE201 3.3 39.1 0.6 NE2 A:GLN126 3.6 42.0 1.0 O A:HOH267 4.0 48.8 1.0 CG A:GLU47 4.4 33.1 1.0 OE2 A:GLU44 4.7 38.2 1.0 CD A:GLN126 4.8 33.0 1.0 O A:HOH268 4.8 45.4 1.0 O A:HOH286 4.9 51.6 1.0 O A:HOH355 5.0 32.5 1.0

Iron binding site 4 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe203 b:47.1 occ:1.00 O A:HOH351 2.0 20.0 1.0 O A:HOH353 2.4 37.7 1.0 OD1 A:ASP6 2.4 27.6 1.0 OE2 A:GLU2 2.5 41.6 1.0 FE A:FE205 3.1 24.2 0.5 O A:HOH347 3.3 47.9 1.0 CG A:ASP6 3.4 26.8 1.0 O A:HOH349 3.6 44.0 1.0 OD2 A:ASP6 3.7 25.8 1.0 CD A:GLU2 3.7 46.3 1.0 FE A:FE204 4.0 35.8 0.3 OE1 A:GLU2 4.6 49.9 1.0 CG A:GLU2 4.6 43.1 1.0 O A:GLU2 4.6 41.3 1.0 CB A:ASP6 4.7 25.4 1.0 O A:HOH283 4.8 24.6 1.0 CA A:ASP6 4.9 25.3 1.0 N A:ASP6 5.0 26.3 1.0

Iron binding site 5 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe204 b:35.8 occ:0.30 O A:HOH349 1.8 44.0 1.0 O A:HOH347 2.3 47.9 1.0 O A:HOH351 3.1 20.0 1.0 FE A:FE206 3.2 52.2 0.2 OE1 A:GLU67 3.8 51.7 1.0 FE A:FE203 4.0 47.1 1.0 CD A:GLU67 4.6 40.6 1.0 OE2 A:GLU67 4.6 50.0 1.0

Iron binding site 6 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe205 b:24.2 occ:0.50 O A:HOH283 1.7 24.6 1.0 OD2 A:ASP6 2.2 25.8 1.0 CG A:ASP6 3.0 26.8 1.0 O A:HOH351 3.1 20.0 1.0 FE A:FE203 3.1 47.1 1.0 OD1 A:ASP6 3.2 27.6 1.0 OE2 A:GLU2 3.2 41.6 1.0 CG A:GLU2 3.6 43.1 1.0 CD A:GLU2 3.8 46.3 1.0 O A:GLU2 4.3 41.3 1.0 CB A:ASP6 4.4 25.4 1.0 O A:HOH347 4.6 47.9 1.0 C A:GLU2 4.8 41.5 1.0 CB A:GLU2 4.9 43.3 1.0 OE1 A:GLU2 5.0 49.9 1.0

Iron binding site 7 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe206 b:52.2 occ:0.25 OE1 A:GLU67 2.8 51.7 1.0 O A:HOH324 3.1 50.0 1.0 FE A:FE204 3.2 35.8 0.3 O A:HOH349 3.4 44.0 1.0 CD A:GLU67 4.1 40.6 1.0 CB A:GLU67 4.8 32.8 1.0 OE2 A:GLU67 4.9 50.0 1.0 CG A:GLU67 5.0 38.6 1.0

Iron binding site 8 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe200 b:32.5 occ:1.00 O B:HOH345 2.0 43.3 1.0 OE2 B:GLU48 2.1 37.9 1.0 OE2 B:GLU94 2.1 25.0 1.0 OE1 B:GLU130 2.1 43.1 1.0 OE1 B:GLU44 2.2 33.9 1.0 O B:HOH344 2.2 32.7 1.0 CD B:GLU130 2.9 42.0 1.0 CD B:GLU94 3.1 27.1 1.0 OE2 B:GLU130 3.2 42.9 1.0 CD B:GLU48 3.2 33.2 1.0 CD B:GLU44 3.3 32.1 1.0 OE1 B:GLU94 3.4 29.1 1.0 O B:HOH342 3.6 45.5 1.0 FE B:FE201 3.7 37.4 0.6 OE2 B:GLU44 3.7 40.3 1.0 OH B:TYR22 4.0 21.7 1.0 OE1 B:GLU48 4.1 37.3 1.0 CG B:GLU48 4.1 24.8 1.0 CE1 B:TYR22 4.2 19.2 1.0 O B:HOH235 4.2 39.9 1.0 CG B:GLU130 4.3 35.3 1.0 CG B:GLU94 4.4 22.9 1.0 CZ B:TYR22 4.5 19.4 1.0 CG B:GLU44 4.6 26.8 1.0 OE1 B:GLN127 4.7 26.7 1.0 ND2 B:ASN97 4.7 31.4 0.7 CB B:GLU130 4.8 29.4 1.0

Iron binding site 9 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:37.4 occ:0.60 OE2 B:GLU44 1.8 40.3 1.0 O B:HOH343 2.1 45.9 1.0 O B:HOH344 2.5 32.7 1.0 OE1 B:GLU47 2.5 47.5 1.0 CD B:GLU44 2.8 32.1 1.0 OE2 B:GLU130 3.0 42.9 1.0 CD B:GLU47 3.0 43.9 1.0 OE1 B:GLU44 3.2 33.9 1.0 FE B:FE202 3.2 36.3 0.3 OE2 B:GLU47 3.2 48.9 1.0 CD B:GLU130 3.2 42.0 1.0 O B:HOH342 3.3 45.5 1.0 O B:HOH340 3.4 51.8 1.0 FE B:FE200 3.7 32.5 1.0 OE1 B:GLU130 3.8 43.1 1.0 CG B:GLU130 3.8 35.3 1.0 CG B:GLU44 4.2 26.8 1.0 CG B:GLU47 4.2 34.1 1.0 CB B:GLU47 4.2 24.1 1.0 NE2 B:GLN126 4.4 46.3 1.0 O B:HOH339 4.5 56.6 1.0

Iron binding site 10 out of 27 in the Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of Ferritin Soaked with Iron From Pseudo-Nitzschia Multiseries within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:36.3 occ:0.30 O B:HOH339 2.1 56.6 1.0 OE1 B:GLU47 2.4 47.5 1.0 O B:HOH343 2.5 45.9 1.0 OE2 B:GLU47 2.8 48.9 1.0 CD B:GLU47 2.9 43.9 1.0 FE B:FE201 3.2 37.4 0.6 NE2 B:GLN126 3.5 46.3 1.0 CG B:GLU47 4.3 34.1 1.0 O B:HOH342 4.5 45.5 1.0 OE2 B:GLU44 4.6 40.3 1.0 O B:HOH340 4.6 51.8 1.0 CD B:GLN126 4.6 44.5 1.0 OE2 B:GLU130 4.7 42.9 1.0 O B:HOH344 4.9 32.7 1.0

A.Marchetti, M.S.Parker, L.P.Moccia, E.O.Lin, A.L.Arrieta, F.Ribalet, M.E.Murphy, M.T.Maldonado, E.V.Armbrust. Ferritin Is Used For Iron Storage in Bloom-Forming Marine Pennate Diatoms. Nature V. 457 467 2009.
ISSN: ISSN 0028-0836
PubMed: 19037243
DOI: 10.1038/NATURE07539