Iron in PDB 3gdj: Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution

The structure of Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution, PDB code: 3gdj was solved by M.Balasubramanian, P.Sathya Moorthy, K.Neelagandan, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.759, 116.782, 52.807, 90.00, 120.07, 90.00
R / Rfree (%)	22.4 / 29.5

The binding sites of Iron atom in the Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution (pdb code 3gdj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution, PDB code: 3gdj:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe142 b:26.8 occ:1.00 FE A:HEM142 0.0 26.8 1.0 NC A:HEM142 2.1 24.9 1.0 ND A:HEM142 2.1 25.4 1.0 NA A:HEM142 2.1 26.6 1.0 NB A:HEM142 2.1 25.1 1.0 O A:HOH158 2.2 33.8 1.0 NE2 A:HIS87 2.4 34.1 1.0 C4D A:HEM142 3.0 24.8 1.0 C1A A:HEM142 3.0 27.1 1.0 C1C A:HEM142 3.1 25.1 1.0 C1D A:HEM142 3.1 24.3 1.0 C4C A:HEM142 3.1 24.6 1.0 C4B A:HEM142 3.1 24.9 1.0 C4A A:HEM142 3.1 26.6 1.0 C1B A:HEM142 3.2 25.5 1.0 CD2 A:HIS87 3.3 33.4 1.0 CE1 A:HIS87 3.4 33.8 1.0 CHA A:HEM142 3.4 25.5 1.0 CHC A:HEM142 3.4 25.5 1.0 CHD A:HEM142 3.5 25.0 1.0 CHB A:HEM142 3.5 25.9 1.0 NE2 A:HIS58 4.1 27.4 1.0 C2A A:HEM142 4.3 28.8 1.0 C3D A:HEM142 4.3 24.6 1.0 C2C A:HEM142 4.3 24.3 1.0 C3A A:HEM142 4.3 27.5 1.0 C2D A:HEM142 4.3 23.9 1.0 C3C A:HEM142 4.3 24.1 1.0 C3B A:HEM142 4.4 23.9 1.0 C2B A:HEM142 4.4 24.5 1.0 CE1 A:HIS58 4.5 27.3 1.0 ND1 A:HIS87 4.5 34.0 1.0 CG A:HIS87 4.5 33.8 1.0 CG2 A:VAL62 4.7 27.2 1.0

Iron binding site 2 out of 4 in the Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe147 b:26.7 occ:1.00 FE B:HEM147 0.0 26.7 1.0 O B:HOH164 1.9 26.5 1.0 NB B:HEM147 2.0 26.6 1.0 NC B:HEM147 2.1 26.8 1.0 ND B:HEM147 2.1 26.9 1.0 NA B:HEM147 2.1 26.7 1.0 NE2 B:HIS92 2.2 27.2 1.0 C4B B:HEM147 3.1 26.9 1.0 C1D B:HEM147 3.1 26.6 1.0 C1B B:HEM147 3.1 27.0 1.0 CE1 B:HIS92 3.1 26.6 1.0 C4C B:HEM147 3.1 27.2 1.0 C1C B:HEM147 3.1 27.2 1.0 C4D B:HEM147 3.1 26.9 1.0 C4A B:HEM147 3.1 26.8 1.0 C1A B:HEM147 3.1 26.8 1.0 CD2 B:HIS92 3.2 26.0 1.0 CHD B:HEM147 3.4 27.0 1.0 CHC B:HEM147 3.4 27.0 1.0 CHB B:HEM147 3.4 26.8 1.0 CHA B:HEM147 3.5 26.7 1.0 NE2 B:HIS63 4.1 25.3 1.0 ND1 B:HIS92 4.2 26.4 1.0 C3B B:HEM147 4.3 27.3 1.0 C2B B:HEM147 4.3 27.5 1.0 C2D B:HEM147 4.3 27.3 1.0 C3D B:HEM147 4.3 28.1 1.0 C3C B:HEM147 4.3 26.4 1.0 C2C B:HEM147 4.3 26.2 1.0 CG B:HIS92 4.3 28.1 1.0 C3A B:HEM147 4.4 27.4 1.0 C2A B:HEM147 4.4 28.6 1.0 CE1 B:HIS63 4.5 25.5 1.0 CG2 B:VAL67 4.6 27.6 1.0

Iron binding site 3 out of 4 in the Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe142 b:27.1 occ:1.00 FE C:HEM142 0.0 27.1 1.0 NB C:HEM142 2.0 26.0 1.0 NC C:HEM142 2.0 25.9 1.0 ND C:HEM142 2.1 25.7 1.0 NA C:HEM142 2.1 27.8 1.0 NE2 C:HIS87 2.2 31.1 1.0 O C:HOH206 2.5 30.4 1.0 C1C C:HEM142 3.0 24.6 1.0 C4B C:HEM142 3.0 24.7 1.0 C1B C:HEM142 3.1 26.1 1.0 C4C C:HEM142 3.1 25.1 1.0 C1D C:HEM142 3.1 25.6 1.0 C4A C:HEM142 3.1 27.0 1.0 C4D C:HEM142 3.1 26.0 1.0 C1A C:HEM142 3.1 27.4 1.0 CD2 C:HIS87 3.1 29.1 1.0 CE1 C:HIS87 3.2 28.7 1.0 CHC C:HEM142 3.4 25.7 1.0 CHD C:HEM142 3.4 25.2 1.0 CHB C:HEM142 3.4 26.7 1.0 CHA C:HEM142 3.5 26.5 1.0 NE2 C:HIS58 4.2 29.0 1.0 C2C C:HEM142 4.3 25.2 1.0 C3B C:HEM142 4.3 24.9 1.0 C3C C:HEM142 4.3 23.6 1.0 C2B C:HEM142 4.3 26.2 1.0 CG C:HIS87 4.3 29.0 1.0 C3A C:HEM142 4.3 28.0 1.0 C2D C:HEM142 4.3 25.3 1.0 ND1 C:HIS87 4.3 29.4 1.0 C3D C:HEM142 4.3 25.5 1.0 C2A C:HEM142 4.4 28.5 1.0 CE1 C:HIS58 4.6 28.6 1.0 CG2 C:VAL62 4.9 27.7 1.0

Iron binding site 4 out of 4 in the Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Determination of Camel(Camelus Dromedarius) Hemoglobin at 2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe147 b:28.2 occ:1.00 FE D:HEM147 0.0 28.2 1.0 O D:HOH236 1.8 24.2 1.0 NC D:HEM147 2.1 27.1 1.0 NE2 D:HIS92 2.1 24.6 1.0 NB D:HEM147 2.1 27.5 1.0 ND D:HEM147 2.1 27.9 1.0 NA D:HEM147 2.1 28.2 1.0 CE1 D:HIS92 2.9 26.2 1.0 C1D D:HEM147 3.1 28.5 1.0 C4C D:HEM147 3.1 28.1 1.0 C1C D:HEM147 3.1 27.2 1.0 C4B D:HEM147 3.1 27.7 1.0 C1B D:HEM147 3.1 28.4 1.0 C4A D:HEM147 3.1 28.8 1.0 C4D D:HEM147 3.1 27.8 1.0 C1A D:HEM147 3.1 28.3 1.0 CD2 D:HIS92 3.2 24.9 1.0 CHD D:HEM147 3.4 27.9 1.0 CHC D:HEM147 3.4 28.0 1.0 CHB D:HEM147 3.5 27.7 1.0 CHA D:HEM147 3.5 28.4 1.0 NE2 D:HIS63 4.1 26.8 1.0 ND1 D:HIS92 4.1 26.3 1.0 CG D:HIS92 4.2 27.2 1.0 C2C D:HEM147 4.3 27.3 1.0 C3C D:HEM147 4.3 28.3 1.0 C2D D:HEM147 4.3 29.0 1.0 C3B D:HEM147 4.3 28.3 1.0 C2B D:HEM147 4.3 28.4 1.0 C3D D:HEM147 4.3 28.8 1.0 C3A D:HEM147 4.4 29.1 1.0 C2A D:HEM147 4.4 29.9 1.0 CE1 D:HIS63 4.5 26.1 1.0 CG2 D:VAL67 4.6 27.5 1.0

M.Balasubramanian, P.Sathya Moorthy, K.Neelagandan, M.N.Ponnuswamy. Crystal Structure Determination of Camel(Camelus Dromedarius)Hemoglobin at 2 Angstrom Resolution To Be Published.