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Iron in PDB 3hq0: Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product

Enzymatic activity of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product

All present enzymatic activity of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product:
1.13.11.2;

Protein crystallography data

The structure of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product, PDB code: 3hq0 was solved by J.-H.Cho, S.Rhee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.900, 97.400, 133.500, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 26.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product (pdb code 3hq0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product, PDB code: 3hq0:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3hq0

Go back to Iron Binding Sites List in 3hq0
Iron binding site 1 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe310

b:23.1
occ:1.00
 NE2 A:HIS154 2.2 9.7 1.0
OE1 A:GLU267 2.2 17.4 1.0
NE2 A:HIS216 2.4 15.3 1.0
CE1 A:HIS154 2.9 8.7 1.0
O A:HOH414 3.1 39.4 1.0
CD A:GLU267 3.2 15.8 1.0
CE1 A:HIS216 3.3 13.6 1.0
CD2 A:HIS154 3.3 11.6 1.0
O A:HOH409 3.5 32.2 1.0
CD2 A:HIS216 3.5 15.1 1.0
OE2 A:GLU267 3.7 15.8 1.0
CB A:SER218 4.0 16.3 1.0
NE2 A:HIS201 4.0 23.7 1.0
OH A:TYR257 4.1 24.4 1.0
ND1 A:HIS154 4.1 9.0 1.0
OG A:SER218 4.2 17.3 1.0
CG A:HIS154 4.4 11.4 1.0
ND1 A:HIS216 4.4 13.8 1.0
CG A:GLU267 4.5 15.0 1.0
CG A:HIS216 4.6 13.8 1.0
CB A:GLU267 4.6 16.1 1.0
CE1 A:HIS201 4.6 23.9 1.0
CE1 A:TYR257 4.7 21.9 1.0
CE1 A:HIS248 4.7 60.4 1.0
CZ A:TYR257 4.9 23.0 1.0

Iron binding site 2 out of 4 in 3hq0

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Iron binding site 2 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe310

b:23.6
occ:1.00
 OE1 B:GLU267 2.2 18.3 1.0
NE2 B:HIS154 2.3 15.1 1.0
NE2 B:HIS216 2.3 16.1 1.0
O3 B:M3P311 2.3 47.7 1.0
C2 B:M3P311 2.7 47.7 1.0
O2 B:M3P311 3.0 46.5 1.0
CE1 B:HIS216 3.0 13.3 1.0
CE1 B:HIS154 3.2 13.7 1.0
CD B:GLU267 3.2 16.8 1.0
CD2 B:HIS154 3.3 17.1 1.0
CD2 B:HIS216 3.5 15.3 1.0
OE2 B:GLU267 3.5 13.3 1.0
C1 B:M3P311 3.9 47.1 1.0
NE2 B:HIS201 3.9 23.5 1.0
CB B:SER218 4.0 16.2 1.0
OG B:SER218 4.0 16.1 1.0
OH B:TYR257 4.1 27.6 1.0
ND1 B:HIS216 4.3 14.1 1.0
ND1 B:HIS154 4.3 17.4 1.0
CG B:HIS154 4.4 16.3 1.0
CG B:GLU267 4.5 15.0 1.0
CG B:HIS216 4.5 15.3 1.0
C5 B:M3P311 4.5 44.4 1.0
CE1 B:HIS201 4.5 24.2 1.0
C6 B:M3P311 4.6 45.5 1.0
CB B:GLU267 4.7 15.1 1.0
O1 B:M3P311 4.8 48.0 1.0
CE1 B:TYR257 4.8 26.4 1.0
CZ B:TYR257 4.9 27.1 1.0

Iron binding site 3 out of 4 in 3hq0

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Iron binding site 3 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe310

b:19.7
occ:1.00
 O2 C:M3P311 2.1 46.5 1.0
OE1 C:GLU267 2.2 14.6 1.0
NE2 C:HIS216 2.2 15.3 1.0
NE2 C:HIS154 2.4 23.2 1.0
CE1 C:HIS216 2.9 14.4 1.0
CD C:GLU267 3.0 15.6 1.0
C2 C:M3P311 3.2 47.1 1.0
OE2 C:GLU267 3.2 15.6 1.0
CE1 C:HIS154 3.2 23.5 1.0
OH C:TYR257 3.4 33.5 1.0
CD2 C:HIS216 3.4 9.7 1.0
CD2 C:HIS154 3.4 22.8 1.0
O3 C:M3P311 3.5 47.5 1.0
CB C:SER218 4.0 21.2 1.0
NE2 C:HIS201 4.1 24.7 1.0
OG C:SER218 4.1 21.9 1.0
ND1 C:HIS216 4.2 14.2 1.0
CE1 C:TYR257 4.3 31.4 1.0
CZ C:TYR257 4.3 32.5 1.0
CG C:GLU267 4.4 15.3 1.0
CG C:HIS216 4.4 13.9 1.0
ND1 C:HIS154 4.4 23.7 1.0
CG C:HIS154 4.5 21.9 1.0
C1 C:M3P311 4.6 46.9 1.0
CB C:GLU267 4.6 15.2 1.0
CE1 C:HIS201 4.6 25.8 1.0
CE1 C:HIS248 4.7 38.3 1.0
O1 C:M3P311 4.7 49.2 1.0

Iron binding site 4 out of 4 in 3hq0

Go back to Iron Binding Sites List in 3hq0
Iron binding site 4 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in Complex with A Product within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe310

b:21.7
occ:1.00
 OE1 D:GLU267 2.1 18.2 1.0
NE2 D:HIS154 2.2 13.9 1.0
NE2 D:HIS216 2.3 12.8 1.0
O2 D:M3P311 2.3 47.4 1.0
O3 D:M3P311 2.5 48.9 1.0
C2 D:M3P311 2.8 48.7 1.0
CE1 D:HIS216 3.0 15.1 1.0
CD D:GLU267 3.1 19.6 1.0
CE1 D:HIS154 3.1 15.3 1.0
CD2 D:HIS154 3.2 15.7 1.0
CD2 D:HIS216 3.4 16.1 1.0
OE2 D:GLU267 3.5 19.1 1.0
CB D:SER218 3.9 15.1 1.0
OH D:TYR257 4.0 30.2 1.0
NE2 D:HIS201 4.2 25.6 1.0
ND1 D:HIS216 4.2 13.2 1.0
OG D:SER218 4.2 14.7 1.0
ND1 D:HIS154 4.3 17.4 1.0
CG D:HIS154 4.4 16.4 1.0
CG D:GLU267 4.4 21.0 1.0
CE1 D:TYR257 4.4 31.6 1.0
CG D:HIS216 4.4 14.5 1.0
C1 D:M3P311 4.4 48.9 1.0
CB D:GLU267 4.6 20.0 1.0
CE1 D:HIS201 4.6 26.0 1.0
CZ D:TYR257 4.7 31.8 1.0
CE1 D:HIS248 4.9 35.4 1.0

Reference:

J.-H.Cho, D.-K.Jung, K.Lee, S.Rhee. Crystal Structure and Functional Analysis of the Extradiol Dioxygenase Lapb From A Long-Chain Alkylphenol Degradation Pathway in Pseudomonas J.Biol.Chem. V. 284 34321 2009.
ISSN: ISSN 0021-9258
PubMed: 19828456
DOI: 10.1074/JBC.M109.031054
Page generated: Tue Aug 5 02:03:28 2025

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