Iron »
PDB 3hnj-3i8r »
3hrd »
Iron in PDB 3hrd: Crystal Structure of Nicotinate Dehydrogenase
Protein crystallography data
The structure of Crystal Structure of Nicotinate Dehydrogenase, PDB code: 3hrd
was solved by
N.Wagener,
A.J.Pierik,
R.Hille,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 29.43 / 2.20 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 97.069, 71.700, 214.485, 90.00, 90.23, 90.00 |
| R / Rfree (%) | 21.3 / 25.1 |
Other elements in 3hrd:
The structure of Crystal Structure of Nicotinate Dehydrogenase also contains other interesting chemical elements:
| Molybdenum | (Mo) | 2 atoms |
| Magnesium | (Mg) | 2 atoms |
| Calcium | (Ca) | 1 atom |
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Nicotinate Dehydrogenase
(pdb code 3hrd). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Nicotinate Dehydrogenase, PDB code: 3hrd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Iron where determined in the Crystal Structure of Nicotinate Dehydrogenase, PDB code: 3hrd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Iron binding site 1 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 1 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 2 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 2 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 3 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 3 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 4 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 4 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 5 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 5 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 6 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 6 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 7 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 7 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 8 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 8 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Reference:
N.Wagener,
A.J.Pierik,
A.Ibdah,
R.Hille,
H.Dobbek.
The Mo-Se Active Site of Nicotinate Dehydrogenase Proc.Natl.Acad.Sci.Usa V. 106 11055 2009.
ISSN: ISSN 0027-8424
PubMed: 19549881
DOI: 10.1073/PNAS.0902210106
Page generated: Sun Aug 4 11:45:34 2024
ISSN: ISSN 0027-8424
PubMed: 19549881
DOI: 10.1073/PNAS.0902210106
Last articles
Zn in 9MJ5Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
