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Iron in PDB 3k8b: Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom

Protein crystallography data

The structure of Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom, PDB code: 3k8b was solved by P.Ramesh, S.S.Sundaresan, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.56 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.999, 79.515, 64.385, 90.00, 96.05, 90.00
R / Rfree (%) 26.4 / 31.1

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom (pdb code 3k8b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom, PDB code: 3k8b:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3k8b

Go back to Iron Binding Sites List in 3k8b
Iron binding site 1 out of 4 in the Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe150

b:47.6
occ:1.00
FE A:HEM150 0.0 47.6 1.0
O A:HOH287 1.5 38.9 1.0
NC A:HEM150 1.9 46.6 1.0
NE2 A:HIS87 2.0 58.0 1.0
NB A:HEM150 2.0 46.8 1.0
ND A:HEM150 2.1 47.3 1.0
NA A:HEM150 2.2 47.6 1.0
C1C A:HEM150 2.9 45.9 1.0
C4C A:HEM150 3.0 45.6 1.0
CE1 A:HIS87 3.0 57.4 1.0
C4B A:HEM150 3.0 47.0 1.0
CD2 A:HIS87 3.0 57.4 1.0
C1D A:HEM150 3.1 47.7 1.0
C1B A:HEM150 3.1 47.5 1.0
C4D A:HEM150 3.1 47.9 1.0
C4A A:HEM150 3.2 47.6 1.0
C1A A:HEM150 3.2 48.5 1.0
CHC A:HEM150 3.3 46.3 1.0
CHD A:HEM150 3.4 47.0 1.0
CHA A:HEM150 3.5 47.6 1.0
CHB A:HEM150 3.5 47.2 1.0
ND1 A:HIS87 4.1 56.9 1.0
CG A:HIS87 4.1 57.5 1.0
CE1 A:HIS58 4.1 44.2 1.0
C2C A:HEM150 4.2 43.9 1.0
C3C A:HEM150 4.2 44.6 1.0
C3B A:HEM150 4.3 47.1 1.0
C2B A:HEM150 4.3 47.4 1.0
NE2 A:HIS58 4.3 43.1 1.0
C2D A:HEM150 4.3 47.3 1.0
C3D A:HEM150 4.4 47.8 1.0
C3A A:HEM150 4.4 48.8 1.0
C2A A:HEM150 4.5 49.3 1.0
CG2 A:VAL62 4.9 46.0 1.0

Iron binding site 2 out of 4 in 3k8b

Go back to Iron Binding Sites List in 3k8b
Iron binding site 2 out of 4 in the Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe150

b:50.1
occ:1.00
FE B:HEM150 0.0 50.1 1.0
O B:HOH290 1.6 35.7 1.0
NC B:HEM150 2.0 49.2 1.0
NB B:HEM150 2.1 48.7 1.0
NE2 B:HIS92 2.1 48.9 1.0
ND B:HEM150 2.1 49.8 1.0
NA B:HEM150 2.2 49.5 1.0
CE1 B:HIS92 2.8 49.2 1.0
C1C B:HEM150 3.0 48.8 1.0
C4B B:HEM150 3.0 48.4 1.0
C4D B:HEM150 3.1 50.4 1.0
C4C B:HEM150 3.1 49.2 1.0
C1A B:HEM150 3.1 50.0 1.0
C1D B:HEM150 3.1 50.0 1.0
C1B B:HEM150 3.1 48.1 1.0
C4A B:HEM150 3.2 49.1 1.0
CD2 B:HIS92 3.3 48.6 1.0
CHC B:HEM150 3.4 48.4 1.0
CHA B:HEM150 3.4 50.5 1.0
CHD B:HEM150 3.5 49.7 1.0
CHB B:HEM150 3.5 48.8 1.0
ND1 B:HIS92 4.0 48.5 1.0
NE2 B:HIS63 4.2 43.2 1.0
C2C B:HEM150 4.2 49.1 1.0
CG B:HIS92 4.2 49.8 1.0
C3C B:HEM150 4.3 49.5 1.0
C3B B:HEM150 4.3 48.4 1.0
C3D B:HEM150 4.3 50.4 1.0
C2A B:HEM150 4.3 51.0 1.0
C2B B:HEM150 4.3 47.1 1.0
C2D B:HEM150 4.3 50.0 1.0
C3A B:HEM150 4.3 50.4 1.0
CG2 B:VAL67 4.4 41.2 1.0
CE1 B:HIS63 4.8 41.4 1.0

Iron binding site 3 out of 4 in 3k8b

Go back to Iron Binding Sites List in 3k8b
Iron binding site 3 out of 4 in the Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe150

b:43.3
occ:1.00
FE C:HEM150 0.0 43.3 1.0
O C:HOH288 1.6 28.9 1.0
NE2 C:HIS87 1.6 54.8 1.0
ND C:HEM150 2.0 41.5 1.0
NC C:HEM150 2.1 41.0 1.0
NA C:HEM150 2.1 41.9 1.0
NB C:HEM150 2.2 40.9 1.0
CE1 C:HIS87 2.6 53.8 1.0
CD2 C:HIS87 2.7 53.2 1.0
C4D C:HEM150 2.9 42.6 1.0
C1A C:HEM150 3.0 43.2 1.0
C1D C:HEM150 3.0 42.5 1.0
C4C C:HEM150 3.1 39.5 1.0
C1C C:HEM150 3.1 40.9 1.0
C4A C:HEM150 3.1 41.9 1.0
C4B C:HEM150 3.2 40.3 1.0
C1B C:HEM150 3.2 40.2 1.0
CHA C:HEM150 3.3 42.7 1.0
CHD C:HEM150 3.4 41.1 1.0
CHC C:HEM150 3.5 40.3 1.0
CHB C:HEM150 3.6 41.8 1.0
ND1 C:HIS87 3.7 51.9 1.0
CG C:HIS87 3.8 52.6 1.0
C3D C:HEM150 4.2 41.1 1.0
C2D C:HEM150 4.2 41.4 1.0
C2A C:HEM150 4.3 44.1 1.0
C2C C:HEM150 4.3 40.3 1.0
C3C C:HEM150 4.3 39.9 1.0
CE1 C:HIS58 4.3 44.9 1.0
C3A C:HEM150 4.3 43.0 1.0
C3B C:HEM150 4.4 38.9 1.0
C2B C:HEM150 4.4 38.6 1.0
NE2 C:HIS58 4.7 43.9 1.0

Iron binding site 4 out of 4 in 3k8b

Go back to Iron Binding Sites List in 3k8b
Iron binding site 4 out of 4 in the Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe150

b:47.7
occ:1.00
FE D:HEM150 0.0 47.7 1.0
NE2 D:HIS92 1.9 45.1 1.0
NB D:HEM150 2.0 45.6 1.0
NC D:HEM150 2.0 45.2 1.0
ND D:HEM150 2.1 46.9 1.0
O D:HOH289 2.1 33.1 1.0
NA D:HEM150 2.2 46.0 1.0
CE1 D:HIS92 2.8 45.7 1.0
C4B D:HEM150 3.0 44.4 1.0
C1C D:HEM150 3.0 44.9 1.0
C1B D:HEM150 3.0 44.9 1.0
CD2 D:HIS92 3.0 45.9 1.0
C4C D:HEM150 3.1 45.3 1.0
C1D D:HEM150 3.1 47.4 1.0
C4A D:HEM150 3.1 46.1 1.0
C4D D:HEM150 3.1 47.5 1.0
C1A D:HEM150 3.2 46.6 1.0
CHC D:HEM150 3.4 44.1 1.0
CHB D:HEM150 3.4 45.4 1.0
CHD D:HEM150 3.5 45.7 1.0
CHA D:HEM150 3.5 48.1 1.0
ND1 D:HIS92 3.9 45.4 1.0
CG D:HIS92 4.1 46.5 1.0
C3B D:HEM150 4.2 43.6 1.0
C2B D:HEM150 4.2 43.9 1.0
C2C D:HEM150 4.2 43.7 1.0
C3C D:HEM150 4.3 45.2 1.0
NE2 D:HIS63 4.3 41.1 1.0
C2D D:HEM150 4.3 47.3 1.0
C3D D:HEM150 4.4 46.9 1.0
C3A D:HEM150 4.4 46.5 1.0
C2A D:HEM150 4.4 46.3 1.0
CG2 D:VAL67 4.5 43.8 1.0
CE1 D:HIS63 4.7 38.3 1.0

Reference:

P.Ramesh, S.S.Sundaresan, M.N.Ponnuswamy. Crystal Structure of Turkey (Meleagiris Gallopova)Hemoglobin at 2.3 Angstrom To Be Published.
Page generated: Sun Aug 4 13:42:54 2024

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