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Iron in PDB 3mvw: X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1

Enzymatic activity of X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1

All present enzymatic activity of X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1:
3.6.3.24;

Protein crystallography data

The structure of X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1, PDB code: 3mvw was solved by C.Cavazza, C.Bochot, P.Rousselot-Pailley, P.Carpentier, M.V.Cherrier, L.Martin, C.Marchi-Delapierre, J.C.Fontecilla-Camps, S.Menage, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.972, 94.583, 124.947, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 20.4

Other elements in 3mvw:

The structure of X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1 (pdb code 3mvw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1, PDB code: 3mvw:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3mvw

Go back to Iron Binding Sites List in 3mvw
Iron binding site 1 out of 2 in the X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe503

b:14.9
occ:1.00
O6 A:BHZ504 2.0 16.8 1.0
O A:HOH1036 2.1 20.9 1.0
N11 A:BHZ504 2.1 19.5 1.0
O21 A:BHZ504 2.1 14.9 1.0
O22 A:BHZ504 2.2 15.5 1.0
N8 A:BHZ504 2.2 18.7 1.0
C10 A:BHZ504 2.8 19.3 1.0
C9 A:BHZ504 2.9 16.6 1.0
C12 A:BHZ504 2.9 17.2 1.0
C20 A:BHZ504 2.9 11.0 1.0
C22 A:BHZ504 2.9 20.3 1.0
C21 A:BHZ504 3.0 19.1 1.0
C19 A:BHZ504 3.1 13.3 1.0
C6 A:BHZ504 3.1 15.7 1.0
C7 A:BHZ504 3.2 15.5 1.0
C1 A:BHZ504 3.5 11.1 1.0
O A:HOH949 3.8 31.2 1.0
O A:HOH1037 3.9 25.2 1.0
O20 A:BHZ504 4.1 12.4 1.0
O23 A:BHZ504 4.2 22.4 1.0
C5 A:BHZ504 4.3 16.2 1.0
NH2 A:ARG137 4.3 11.4 1.0
C13 A:BHZ504 4.4 18.9 1.0
C2 A:BHZ504 4.9 14.1 1.0

Iron binding site 2 out of 2 in 3mvw

Go back to Iron Binding Sites List in 3mvw
Iron binding site 2 out of 2 in the X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Structure of A "Nika+Iron Complex" Hybrid, Nika/1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe503

b:15.2
occ:1.00
O21 B:BHZ504 2.0 12.4 1.0
O6 B:BHZ504 2.1 16.4 1.0
O22 B:BHZ504 2.2 18.6 1.0
N8 B:BHZ504 2.2 15.8 1.0
N11 B:BHZ504 2.2 20.4 1.0
O B:HOH736 2.2 20.4 1.0
C12 B:BHZ504 2.9 20.1 1.0
C20 B:BHZ504 2.9 12.8 1.0
C10 B:BHZ504 3.0 21.1 1.0
C22 B:BHZ504 3.0 21.2 1.0
C9 B:BHZ504 3.0 18.3 1.0
C19 B:BHZ504 3.1 13.7 1.0
C21 B:BHZ504 3.1 21.2 1.0
C7 B:BHZ504 3.1 13.3 1.0
C6 B:BHZ504 3.1 13.9 1.0
C1 B:BHZ504 3.5 14.8 1.0
O B:HOH685 4.1 25.3 1.0
O20 B:BHZ504 4.1 14.7 1.0
O23 B:BHZ504 4.2 23.3 1.0
NH2 B:ARG137 4.3 10.0 1.0
C5 B:BHZ504 4.3 15.3 1.0
C13 B:BHZ504 4.4 23.5 1.0
C2 B:BHZ504 4.9 12.1 1.0

Reference:

C.Cavazza, C.Bochot, P.Rousselot-Pailley, P.Carpentier, M.V.Cherrier, L.Martin, C.Marchi-Delapierre, J.C.Fontecilla-Camps, S.Menage. Crystallographic Snapshots of the Reaction of Aromatic C-H with O(2) Catalysed By A Protein-Bound Iron Complex Nat.Chem. V. 2 1069 2010.
ISSN: ISSN 1755-4330
PubMed: 21107372
DOI: 10.1038/NCHEM.841
Page generated: Sun Aug 4 15:44:14 2024

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