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Iron in PDB 3ogb: Sperm Whale Myoglobin Mutant H64W Deoxy-Form

Protein crystallography data

The structure of Sperm Whale Myoglobin Mutant H64W Deoxy-Form, PDB code: 3ogb was solved by I.Birukou, J.Soman, J.S.Olson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.57 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.830, 47.130, 88.930, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.3

Iron Binding Sites:

The binding sites of Iron atom in the Sperm Whale Myoglobin Mutant H64W Deoxy-Form (pdb code 3ogb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Sperm Whale Myoglobin Mutant H64W Deoxy-Form, PDB code: 3ogb:

Iron binding site 1 out of 1 in 3ogb

Go back to Iron Binding Sites List in 3ogb
Iron binding site 1 out of 1 in the Sperm Whale Myoglobin Mutant H64W Deoxy-Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sperm Whale Myoglobin Mutant H64W Deoxy-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:14.6
occ:1.00
FE A:HEM154 0.0 14.6 1.0
NB A:HEM154 2.0 13.2 1.0
NC A:HEM154 2.1 13.6 1.0
NA A:HEM154 2.1 13.6 1.0
ND A:HEM154 2.1 13.4 1.0
NE2 A:HIS93 2.1 11.1 1.0
C4B A:HEM154 3.1 13.6 1.0
C1B A:HEM154 3.1 10.2 1.0
CE1 A:HIS93 3.1 11.3 1.0
C4C A:HEM154 3.1 12.4 1.0
C1D A:HEM154 3.1 12.8 1.0
C1C A:HEM154 3.1 15.2 1.0
C4A A:HEM154 3.1 12.2 1.0
C1A A:HEM154 3.1 12.9 1.0
C4D A:HEM154 3.1 16.4 1.0
CD2 A:HIS93 3.2 11.4 1.0
CHD A:HEM154 3.4 13.8 1.0
CHC A:HEM154 3.4 12.9 1.0
CHB A:HEM154 3.4 11.8 1.0
CHA A:HEM154 3.5 14.0 1.0
ND1 A:HIS93 4.2 15.7 1.0
C3B A:HEM154 4.3 12.2 1.0
C2B A:HEM154 4.3 12.5 1.0
CG A:HIS93 4.3 14.2 1.0
C2C A:HEM154 4.3 11.5 1.0
C3A A:HEM154 4.3 14.2 1.0
C3C A:HEM154 4.3 14.9 1.0
C2A A:HEM154 4.3 14.6 1.0
C2D A:HEM154 4.3 16.4 1.0
C3D A:HEM154 4.4 17.6 1.0
CG2 A:VAL68 4.4 13.8 1.0
CD2 A:HIS97 4.8 15.8 1.0

Reference:

I.Birukou, J.Soman, J.S.Olson. Blocking the Gate to Ligand Entry in Human Hemoglobin. J.Biol.Chem. V. 286 10515 2011.
ISSN: ISSN 0021-9258
PubMed: 21193395
DOI: 10.1074/JBC.M110.176271
Page generated: Tue Aug 5 05:10:14 2025

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