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Iron in PDB 3qy7: Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

Enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

All present enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy7 was solved by H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.-J.Kim, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.449, 47.311, 132.013, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.7

Other elements in 3qy7:

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases (pdb code 3qy7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy7:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3qy7

Go back to Iron Binding Sites List in 3qy7
Iron binding site 1 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe263

b:14.8
occ:1.00
 O A:HOH548 2.1 13.3 1.0
O4 A:PO4266 2.1 27.3 1.0
OE2 A:GLU80 2.1 12.4 1.0
OE1 A:GLU108 2.1 15.2 1.0
NE2 A:HIS136 2.2 15.6 1.0
O A:HOH549 2.2 22.5 1.0
CD A:GLU108 3.0 16.8 1.0
CD A:GLU80 3.1 12.3 1.0
CE1 A:HIS136 3.2 13.9 1.0
CD2 A:HIS136 3.2 12.3 1.0
P A:PO4266 3.2 25.9 1.0
OE1 A:GLU80 3.3 11.1 1.0
FE A:FE264 3.5 12.5 1.0
CG A:GLU108 3.6 15.5 1.0
O1 A:PO4266 3.6 21.8 1.0
O2 A:PO4266 3.7 25.5 1.0
OE2 A:GLU108 4.0 18.9 1.0
O A:HOH541 4.0 30.3 1.0
CE1 A:HIS42 4.1 21.3 1.0
O A:HOH495 4.2 36.2 1.0
ND1 A:HIS136 4.3 13.1 1.0
CG A:HIS136 4.3 12.4 1.0
OD2 A:ASP194 4.3 17.6 1.0
CG A:GLU80 4.4 12.6 1.0
CE1 A:HIS5 4.4 7.5 1.0
O3 A:PO4266 4.5 25.2 1.0
CB A:GLU108 4.5 15.6 1.0
O A:HOH511 4.6 36.6 1.0
NE2 A:HIS5 4.6 9.9 1.0
NE2 A:HIS42 4.8 23.4 1.0
O A:HOH359 4.9 35.3 1.0
CB A:ALA135 4.9 12.3 1.0
OD1 A:ASP194 5.0 11.7 1.0

Iron binding site 2 out of 2 in 3qy7

Go back to Iron Binding Sites List in 3qy7
Iron binding site 2 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe264

b:12.5
occ:1.00
 O A:HOH548 1.9 13.3 1.0
O1 A:PO4266 2.1 21.8 1.0
NE2 A:HIS5 2.1 9.9 1.0
NE2 A:HIS7 2.1 12.5 1.0
OE1 A:GLU80 2.2 11.1 1.0
OD1 A:ASP194 2.2 11.7 1.0
CE1 A:HIS5 3.0 7.5 1.0
CE1 A:HIS7 3.0 8.7 1.0
CD A:GLU80 3.1 12.3 1.0
CG A:ASP194 3.1 12.5 1.0
CD2 A:HIS7 3.1 10.1 1.0
CD2 A:HIS5 3.2 11.8 1.0
OD2 A:ASP194 3.3 17.6 1.0
P A:PO4266 3.3 25.9 1.0
OE2 A:GLU80 3.4 12.4 1.0
FE A:FE263 3.5 14.8 1.0
O4 A:PO4266 3.5 27.3 1.0
CE1 A:HIS196 4.0 16.4 1.0
ND1 A:HIS7 4.1 11.7 1.0
O2 A:PO4266 4.1 25.5 1.0
ND1 A:HIS5 4.2 10.3 1.0
CG A:HIS7 4.2 11.3 1.0
CG A:HIS5 4.3 10.8 1.0
NE2 A:HIS42 4.3 23.4 1.0
MG A:MG265 4.3 15.3 1.0
CG A:GLU80 4.3 12.6 1.0
CE1 A:HIS42 4.4 21.3 1.0
CB A:ASP194 4.4 11.4 1.0
O3 A:PO4266 4.4 25.2 1.0
NE2 A:HIS196 4.6 18.3 1.0
CB A:GLU80 4.6 11.4 1.0
O A:HOH549 4.7 22.5 1.0
CA A:ASP194 4.8 12.0 1.0
NE2 A:HIS136 4.8 15.6 1.0
CD2 A:HIS136 4.8 12.3 1.0
NH1 A:ARG201 5.0 28.7 1.0

Reference:

H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.J.Kim, S.W.Suh. Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases. J.Struct.Biol. V. 175 442 2011.
ISSN: ISSN 1047-8477
PubMed: 21605684
DOI: 10.1016/J.JSB.2011.05.007
Page generated: Sun Aug 4 18:56:11 2024

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