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Iron in PDB 3sdh: High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin

Protein crystallography data

The structure of High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin, PDB code: 3sdh was solved by W.E.Royerjunior, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.250, 43.980, 83.500, 90.00, 122.03, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin (pdb code 3sdh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin, PDB code: 3sdh:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3sdh

Go back to Iron Binding Sites List in 3sdh
Iron binding site 1 out of 2 in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe147

b:14.5
occ:1.00
FE A:HEM147 0.0 14.5 1.0
C A:CMO501 1.8 14.8 1.0
NC A:HEM147 2.0 14.9 1.0
NB A:HEM147 2.0 14.4 1.0
NA A:HEM147 2.0 14.2 1.0
ND A:HEM147 2.0 14.7 1.0
NE2 A:HIS101 2.1 14.5 1.0
O A:CMO501 2.9 14.0 1.0
C4C A:HEM147 3.0 15.6 1.0
C4B A:HEM147 3.0 14.6 1.0
C1C A:HEM147 3.0 14.7 1.0
CE1 A:HIS101 3.0 14.2 1.0
C1A A:HEM147 3.0 14.8 1.0
C1B A:HEM147 3.0 14.8 1.0
C4D A:HEM147 3.0 15.7 1.0
C4A A:HEM147 3.1 14.4 1.0
C1D A:HEM147 3.1 16.0 1.0
CD2 A:HIS101 3.1 14.4 1.0
CHA A:HEM147 3.4 15.5 1.0
CHC A:HEM147 3.4 14.9 1.0
CHD A:HEM147 3.4 15.4 1.0
CHB A:HEM147 3.4 14.4 1.0
ND1 A:HIS101 4.2 14.9 1.0
CG A:HIS101 4.2 14.5 1.0
C2C A:HEM147 4.2 15.4 1.0
C3C A:HEM147 4.2 15.7 1.0
C3B A:HEM147 4.3 15.5 1.0
C2B A:HEM147 4.3 14.9 1.0
C2A A:HEM147 4.3 15.0 1.0
C3D A:HEM147 4.3 16.2 1.0
C3A A:HEM147 4.3 14.7 1.0
C2D A:HEM147 4.3 16.2 1.0
CE1 A:HIS69 4.7 17.9 1.0
CD1 A:LEU73 4.7 20.9 1.0
CE1 A:PHE111 4.9 18.1 1.0

Iron binding site 2 out of 2 in 3sdh

Go back to Iron Binding Sites List in 3sdh
Iron binding site 2 out of 2 in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:14.2
occ:1.00
FE B:HEM147 0.0 14.2 1.0
C B:CMO501 1.8 15.3 1.0
NB B:HEM147 2.0 15.4 1.0
NA B:HEM147 2.0 14.1 1.0
NC B:HEM147 2.0 14.9 1.0
ND B:HEM147 2.0 15.3 1.0
NE2 B:HIS101 2.1 14.7 1.0
O B:CMO501 2.9 15.0 1.0
C1B B:HEM147 3.0 15.5 1.0
C4B B:HEM147 3.0 15.8 1.0
C4C B:HEM147 3.0 15.4 1.0
CE1 B:HIS101 3.0 16.0 1.0
C4D B:HEM147 3.0 15.4 1.0
C4A B:HEM147 3.0 14.9 1.0
C1A B:HEM147 3.0 15.0 1.0
C1C B:HEM147 3.1 15.6 1.0
C1D B:HEM147 3.1 15.6 1.0
CD2 B:HIS101 3.1 14.3 1.0
CHB B:HEM147 3.4 15.7 1.0
CHA B:HEM147 3.4 15.2 1.0
CHD B:HEM147 3.4 15.2 1.0
CHC B:HEM147 3.5 15.5 1.0
ND1 B:HIS101 4.2 14.7 1.0
CG B:HIS101 4.2 14.5 1.0
C3D B:HEM147 4.3 15.9 1.0
C2B B:HEM147 4.3 15.6 1.0
C3B B:HEM147 4.3 15.8 1.0
C2A B:HEM147 4.3 15.3 1.0
C2D B:HEM147 4.3 15.7 1.0
C3A B:HEM147 4.3 15.8 1.0
C3C B:HEM147 4.3 15.6 1.0
C2C B:HEM147 4.3 15.3 1.0
CD1 B:LEU73 4.7 19.4 1.0
CE1 B:HIS69 4.8 16.4 1.0
CE2 B:PHE111 4.9 15.7 1.0

Reference:

W.E.Royer Jr., W.E.Royerjunior. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 8289287
DOI: 10.1006/JMBI.1994.1019
Page generated: Sun Aug 4 19:54:31 2024

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