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Iron in PDB 3sn5: Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One

Enzymatic activity of Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One

All present enzymatic activity of Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One:
1.14.13.17;

Protein crystallography data

The structure of Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One, PDB code: 3sn5 was solved by N.Strushkevich, W.Tempel, F.Mackenzie, A.K.Wernimont, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, H.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.160, 137.630, 160.150, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One (pdb code 3sn5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One, PDB code: 3sn5:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3sn5

Go back to Iron Binding Sites List in 3sn5
Iron binding site 1 out of 2 in the Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:49.5
occ:1.00
FE A:HEM601 0.0 49.5 1.0
NA A:HEM601 1.9 50.1 1.0
NB A:HEM601 2.0 49.8 1.0
ND A:HEM601 2.0 49.1 1.0
NC A:HEM601 2.0 49.0 1.0
SG A:CYS444 2.3 49.9 1.0
O A:HOH2601 2.8 1.0 0.0
C4B A:HEM601 3.0 50.1 1.0
C1D A:HEM601 3.0 49.2 1.0
C1A A:HEM601 3.0 50.3 1.0
C1B A:HEM601 3.0 50.8 1.0
C4D A:HEM601 3.0 49.8 1.0
C4A A:HEM601 3.0 50.8 1.0
C1C A:HEM601 3.0 49.2 1.0
C4C A:HEM601 3.1 48.9 1.0
CB A:CYS444 3.3 47.5 1.0
CHC A:HEM601 3.4 50.4 1.0
CHA A:HEM601 3.4 50.5 1.0
CHB A:HEM601 3.4 51.4 1.0
CHD A:HEM601 3.4 49.6 1.0
CA A:CYS444 4.2 48.0 1.0
C2A A:HEM601 4.2 51.5 1.0
C3A A:HEM601 4.2 51.9 1.0
C3B A:HEM601 4.2 51.4 1.0
C2B A:HEM601 4.2 51.5 1.0
C2D A:HEM601 4.3 49.9 1.0
C2C A:HEM601 4.3 49.7 1.0
C3D A:HEM601 4.3 50.4 1.0
C3C A:HEM601 4.3 49.3 1.0
O A:ALA285 4.3 50.6 1.0
ND2 A:ASN289 4.8 60.2 1.0
C A:CYS444 4.9 49.3 1.0
N A:GLY446 4.9 42.6 1.0
CD A:PRO445 5.0 43.7 1.0

Iron binding site 2 out of 2 in 3sn5

Go back to Iron Binding Sites List in 3sn5
Iron binding site 2 out of 2 in the Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:49.1
occ:1.00
FE B:HEM601 0.0 49.1 1.0
NA B:HEM601 2.0 50.2 1.0
NB B:HEM601 2.0 48.9 1.0
ND B:HEM601 2.0 49.8 1.0
NC B:HEM601 2.0 48.7 1.0
SG B:CYS444 2.3 52.8 1.0
O B:HOH2601 2.5 1.0 0.0
C4B B:HEM601 3.0 49.0 1.0
C1D B:HEM601 3.0 50.2 1.0
C1C B:HEM601 3.0 48.5 1.0
C1A B:HEM601 3.0 50.9 1.0
C1B B:HEM601 3.0 49.7 1.0
C4D B:HEM601 3.0 50.8 1.0
C4A B:HEM601 3.0 50.6 1.0
C4C B:HEM601 3.1 49.2 1.0
CB B:CYS444 3.3 49.8 1.0
CHC B:HEM601 3.4 49.3 1.0
CHA B:HEM601 3.4 51.5 1.0
CHB B:HEM601 3.4 50.7 1.0
CHD B:HEM601 3.4 50.4 1.0
CA B:CYS444 4.2 50.6 1.0
C2A B:HEM601 4.2 52.0 1.0
C2C B:HEM601 4.2 49.2 1.0
C3B B:HEM601 4.2 49.9 1.0
C3A B:HEM601 4.2 51.9 1.0
C2B B:HEM601 4.2 50.1 1.0
O B:ALA285 4.3 52.2 1.0
C2D B:HEM601 4.3 51.5 1.0
C3C B:HEM601 4.3 49.5 1.0
C3D B:HEM601 4.3 51.9 1.0
ND2 B:ASN289 4.8 59.7 1.0
C B:CYS444 4.9 52.8 1.0
N B:GLY446 5.0 40.2 1.0

Reference:

N.Strushkevich, W.Tempel, F.Mackenzie, A.K.Wernimont, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, H.Park. Crystal Structure of Human CYP7A1 in Complex with Cholest-4-En-3-One To Be Published.
Page generated: Sun Aug 4 20:00:10 2024

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