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Iron in PDB 3tny: Structure of Yfiy From Bacillus Cereus Bound to the Siderophore Iron (III) Schizokinen

Protein crystallography data

The structure of Structure of Yfiy From Bacillus Cereus Bound to the Siderophore Iron (III) Schizokinen, PDB code: 3tny was solved by M.C.Clifton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.796, 47.328, 64.981, 90.00, 112.88, 90.00
R / Rfree (%) 17.2 / 18.9

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Yfiy From Bacillus Cereus Bound to the Siderophore Iron (III) Schizokinen (pdb code 3tny). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of Yfiy From Bacillus Cereus Bound to the Siderophore Iron (III) Schizokinen, PDB code: 3tny:

Iron binding site 1 out of 1 in 3tny

Go back to Iron Binding Sites List in 3tny
Iron binding site 1 out of 1 in the Structure of Yfiy From Bacillus Cereus Bound to the Siderophore Iron (III) Schizokinen


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Yfiy From Bacillus Cereus Bound to the Siderophore Iron (III) Schizokinen within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe290

b:19.2
occ:0.80
FE A:SKZ290 0.0 19.2 0.8
O24 A:SKZ290 1.9 23.4 0.8
O14 A:SKZ290 2.1 21.5 0.8
O2 A:SKZ290 2.1 14.4 0.8
O5 A:SKZ290 2.1 13.5 0.8
O27 A:SKZ290 2.1 20.9 0.8
O16 A:SKZ290 2.1 21.1 0.8
N23 A:SKZ290 2.8 22.2 0.8
C25 A:SKZ290 2.8 21.9 0.8
C15 A:SKZ290 2.8 21.0 0.8
N13 A:SKZ290 2.8 20.4 0.8
C3 A:SKZ290 2.9 14.2 0.8
C1 A:SKZ290 3.0 14.5 0.8
N28 A:SKZ290 3.6 16.3 0.8
O A:HOH592 4.0 34.9 1.0
C18 A:SKZ290 4.0 16.9 0.8
C6 A:SKZ290 4.0 15.2 0.8
NH2 A:ARG91 4.1 18.1 1.0
NH1 A:ARG169 4.1 18.3 1.0
O4 A:SKZ290 4.1 12.4 0.8
C22 A:SKZ290 4.2 21.6 0.8
C7 A:SKZ290 4.2 14.4 0.8
C12 A:SKZ290 4.2 19.9 0.8
N26 A:SKZ290 4.2 18.6 0.8
C17 A:SKZ290 4.2 22.1 0.8
C26 A:SKZ290 4.3 22.3 0.8
NH1 A:ARG91 4.3 19.6 1.0
C8 A:SKZ290 4.3 14.5 0.8
O19 A:SKZ290 4.4 17.1 0.8
NH2 A:ARG169 4.5 20.8 1.0
C21 A:SKZ290 4.5 21.0 0.8
C11 A:SKZ290 4.5 18.4 0.8
C29 A:SKZ290 4.5 17.6 0.8
CZ A:ARG91 4.7 19.4 1.0
CZ A:ARG169 4.8 19.3 1.0
C27 A:SKZ290 4.9 19.6 0.8

Reference:

M.C.Clifton, P.B.Rupert, T.M.Hoette, K.N.Raymond, R.J.Abergel, R.K.Strong. Parsing the Functional Specificity of Siderocalin / Lipocalin 2 / Ngal For Siderophores and Related Small-Molecule Ligands To Be Published.
Page generated: Tue Aug 5 07:06:32 2025

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