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Iron in PDB 3uhc: Hbi (N79A) Co Bound

Protein crystallography data

The structure of Hbi (N79A) Co Bound, PDB code: 3uhc was solved by Z.Ren, V.Srajer, J.E.Knapp, W.E.Royer Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.42 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.200, 43.970, 83.530, 90.00, 122.01, 90.00
R / Rfree (%) 20.2 / 22.7

Iron Binding Sites:

The binding sites of Iron atom in the Hbi (N79A) Co Bound (pdb code 3uhc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Hbi (N79A) Co Bound, PDB code: 3uhc:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3uhc

Go back to Iron Binding Sites List in 3uhc
Iron binding site 1 out of 2 in the Hbi (N79A) Co Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Hbi (N79A) Co Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe147

b:14.8
occ:1.00
FE A:HEM147 0.0 14.8 1.0
C A:CMO148 1.9 14.3 1.0
NB A:HEM147 2.0 15.2 1.0
NC A:HEM147 2.0 12.6 1.0
NA A:HEM147 2.0 11.9 1.0
ND A:HEM147 2.0 15.5 1.0
NE2 A:HIS101 2.1 15.6 1.0
CE1 A:HIS101 3.0 14.5 1.0
C1A A:HEM147 3.0 16.3 1.0
C4B A:HEM147 3.1 13.8 1.0
C4A A:HEM147 3.1 17.8 1.0
C1C A:HEM147 3.1 15.5 1.0
C1B A:HEM147 3.1 14.6 1.0
C4D A:HEM147 3.1 14.8 1.0
C1D A:HEM147 3.1 15.7 1.0
C4C A:HEM147 3.1 16.8 1.0
CD2 A:HIS101 3.1 13.5 1.0
O A:CMO148 3.1 18.4 1.0
CHC A:HEM147 3.4 14.7 1.0
CHA A:HEM147 3.4 14.3 1.0
CHD A:HEM147 3.5 16.5 1.0
CHB A:HEM147 3.5 17.0 1.0
ND1 A:HIS101 4.2 16.4 1.0
CG A:HIS101 4.2 15.7 1.0
C2A A:HEM147 4.3 15.3 1.0
C3A A:HEM147 4.3 16.6 1.0
C2B A:HEM147 4.3 15.7 1.0
C2C A:HEM147 4.3 16.1 1.0
C3B A:HEM147 4.3 16.0 1.0
C3D A:HEM147 4.3 17.8 1.0
C2D A:HEM147 4.3 16.6 1.0
C3C A:HEM147 4.3 16.4 1.0
CE1 A:HIS69 4.8 20.7 1.0
CE1 A:PHE111 4.9 17.4 1.0

Iron binding site 2 out of 2 in 3uhc

Go back to Iron Binding Sites List in 3uhc
Iron binding site 2 out of 2 in the Hbi (N79A) Co Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Hbi (N79A) Co Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:14.1
occ:1.00
FE B:HEM147 0.0 14.1 1.0
C B:CMO148 1.9 11.6 1.0
ND B:HEM147 2.0 13.8 1.0
NB B:HEM147 2.0 13.5 1.0
NA B:HEM147 2.0 12.6 1.0
NC B:HEM147 2.0 12.2 1.0
NE2 B:HIS101 2.1 12.9 1.0
C1D B:HEM147 3.1 12.9 1.0
C4B B:HEM147 3.1 13.1 1.0
C4C B:HEM147 3.1 11.6 1.0
C1B B:HEM147 3.1 12.5 1.0
C4D B:HEM147 3.1 15.1 1.0
C1A B:HEM147 3.1 15.4 1.0
C1C B:HEM147 3.1 13.6 1.0
CE1 B:HIS101 3.1 15.9 1.0
C4A B:HEM147 3.1 14.1 1.0
CD2 B:HIS101 3.1 13.4 1.0
O B:CMO148 3.1 17.8 1.0
CHD B:HEM147 3.4 14.8 1.0
CHA B:HEM147 3.4 13.6 1.0
CHC B:HEM147 3.4 13.6 1.0
CHB B:HEM147 3.5 14.8 1.0
ND1 B:HIS101 4.2 13.4 1.0
CG B:HIS101 4.2 13.9 1.0
C3B B:HEM147 4.3 14.8 1.0
C2D B:HEM147 4.3 15.9 1.0
C2B B:HEM147 4.3 14.8 1.0
C2C B:HEM147 4.3 13.3 1.0
C2A B:HEM147 4.3 15.1 1.0
C3D B:HEM147 4.3 15.8 1.0
C3C B:HEM147 4.3 13.7 1.0
C3A B:HEM147 4.3 14.9 1.0
CE1 B:HIS69 4.8 16.6 1.0
CD1 B:LEU73 4.9 21.5 1.0
CE2 B:PHE111 5.0 15.8 1.0

Reference:

Z.Ren, V.Srajer, J.E.Knapp, W.E.Royer. Cooperative Macromolecular Device Revealed By Meta-Analysis of Static and Time-Resolved Structures. Proc.Natl.Acad.Sci.Usa V. 109 107 2012.
ISSN: ISSN 0027-8424
PubMed: 22171006
DOI: 10.1073/PNAS.1109213108
Page generated: Sun Aug 4 20:57:45 2024

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