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Iron in PDB 3v7p: Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2

Protein crystallography data

The structure of Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2, PDB code: 3v7p was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, F.M.Raushel, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.515, 75.169, 75.646, 90.00, 120.72, 90.00
R / Rfree (%) 12.8 / 16.1

Other elements in 3v7p:

The structure of Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2 also contains other interesting chemical elements:

Potassium (K) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2 (pdb code 3v7p). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2, PDB code: 3v7p:

Iron binding site 1 out of 1 in 3v7p

Go back to Iron Binding Sites List in 3v7p
Iron binding site 1 out of 1 in the Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500396) From Nitratiruptor Sp. SB155-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe429

b:17.4
occ:1.00
O A:HOH608 1.9 17.6 1.0
NE2 A:HIS61 2.0 15.8 1.0
NE2 A:HIS63 2.1 16.7 1.0
NE2 A:HIS206 2.2 17.1 1.0
OD1 A:ASP306 2.6 19.4 1.0
CE1 A:HIS61 2.9 15.7 1.0
CD2 A:HIS206 3.0 17.5 1.0
CD2 A:HIS63 3.0 16.8 1.0
CE1 A:HIS63 3.1 18.7 1.0
CD2 A:HIS61 3.1 15.4 1.0
CE1 A:HIS206 3.3 16.8 1.0
O A:HOH602 3.6 28.2 1.0
CG A:ASP306 3.6 15.8 1.0
OD2 A:ASP306 3.9 18.1 1.0
N A:UNL436 4.0 25.0 1.0
ND1 A:HIS61 4.1 15.3 1.0
NE2 A:HIS257 4.1 16.1 1.0
O2 A:UNL436 4.2 42.9 1.0
ND1 A:HIS63 4.2 17.4 1.0
CG A:HIS63 4.2 16.2 1.0
CG A:HIS61 4.2 14.7 1.0
CG A:HIS206 4.2 15.5 1.0
ND1 A:HIS206 4.3 15.5 1.0
C1 A:UNL436 4.8 35.6 1.0
CE1 A:HIS257 4.8 15.1 1.0
CG1 A:ILE119 4.9 17.9 1.0
O A:HOH491 4.9 22.3 1.0
CG1 A:VAL256 4.9 14.5 1.0
C2 A:UNL436 4.9 33.7 1.0
O A:HOH517 5.0 21.8 1.0
CB A:ASP306 5.0 15.4 1.0

Reference:

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, F.M.Raushel, S.C.Almo. Crystal Structure of Amidohydrolase NIS_0429 (Target Efi-500319) From Nitratiruptor Sp. SB155-2 To Be Published.
Page generated: Sun Aug 4 21:46:25 2024

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