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Iron in PDB 3vnw: Crystal Structure of Cytochrome C552 From Thermus Thermophilus at pH 5.44

Protein crystallography data

The structure of Crystal Structure of Cytochrome C552 From Thermus Thermophilus at pH 5.44, PDB code: 3vnw was solved by S.Yamada, N.D.Bouley-Ford, G.E.Keller, J.R.Winkler, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.97
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 86.980, 86.980, 31.820, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 23.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome C552 From Thermus Thermophilus at pH 5.44 (pdb code 3vnw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cytochrome C552 From Thermus Thermophilus at pH 5.44, PDB code: 3vnw:

Iron binding site 1 out of 1 in 3vnw

Go back to Iron Binding Sites List in 3vnw
Iron binding site 1 out of 1 in the Crystal Structure of Cytochrome C552 From Thermus Thermophilus at pH 5.44


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C552 From Thermus Thermophilus at pH 5.44 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:17.0
occ:1.00
FE A:HEM200 0.0 17.0 1.0
NB A:HEM200 2.0 16.2 1.0
NA A:HEM200 2.1 15.9 1.0
NC A:HEM200 2.1 16.7 1.0
NE2 A:HIS15 2.1 16.9 1.0
ND A:HEM200 2.1 16.1 1.0
SD A:MET69 2.3 15.8 1.0
C1B A:HEM200 3.0 16.8 1.0
C4B A:HEM200 3.0 15.5 1.0
C4A A:HEM200 3.0 15.8 1.0
CD2 A:HIS15 3.0 17.0 1.0
C4C A:HEM200 3.1 18.1 1.0
C1D A:HEM200 3.1 17.1 1.0
CE1 A:HIS15 3.1 18.7 1.0
C1C A:HEM200 3.1 17.7 1.0
C1A A:HEM200 3.1 16.0 1.0
C4D A:HEM200 3.1 17.6 1.0
CE A:MET69 3.3 17.0 1.0
CHB A:HEM200 3.4 14.2 1.0
CHD A:HEM200 3.4 16.2 1.0
CHC A:HEM200 3.4 15.9 1.0
CHA A:HEM200 3.5 16.2 1.0
CG A:MET69 3.5 18.0 1.0
C2B A:HEM200 4.2 14.8 1.0
CG A:HIS15 4.2 17.7 1.0
C3B A:HEM200 4.2 16.2 1.0
ND1 A:HIS15 4.2 18.8 1.0
CB A:MET69 4.2 18.8 1.0
C3A A:HEM200 4.3 14.7 1.0
C2A A:HEM200 4.3 16.6 1.0
C3C A:HEM200 4.3 17.9 1.0
C2C A:HEM200 4.3 18.0 1.0
C2D A:HEM200 4.3 15.9 1.0
C3D A:HEM200 4.4 17.0 1.0

Reference:

S.Yamada, N.D.Bouley-Ford, G.E.Keller, W.C.Ford, H.B.Gray, J.R.Winkler. Snapshots of A Protein Folding Intermediate Proc.Natl.Acad.Sci.Usa V. 110 1606 2013.
ISSN: ISSN 0027-8424
PubMed: 23319660
DOI: 10.1073/PNAS.1221832110
Page generated: Tue Aug 5 08:02:13 2025

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