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Iron in PDB 3wnw: Structure of Mouse H-Chain Modified Ferritin

Enzymatic activity of Structure of Mouse H-Chain Modified Ferritin

All present enzymatic activity of Structure of Mouse H-Chain Modified Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Structure of Mouse H-Chain Modified Ferritin, PDB code: 3wnw was solved by R.Zarivach, L.Lewin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.86 / 2.24
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 218.145, 218.145, 147.690, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26.5

Other elements in 3wnw:

The structure of Structure of Mouse H-Chain Modified Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 20 atoms
Potassium (K) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Mouse H-Chain Modified Ferritin (pdb code 3wnw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Mouse H-Chain Modified Ferritin, PDB code: 3wnw:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3wnw

Go back to Iron Binding Sites List in 3wnw
Iron binding site 1 out of 4 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:31.7
occ:1.00
NE2 A:HIS173 3.1 15.3 1.0
NE2 J:HIS173 3.2 20.6 1.0
CE1 A:HIS173 3.8 16.1 1.0
CE1 J:HIS173 3.9 20.6 1.0
CD2 A:LEU169 3.9 8.5 1.0
CD2 J:LEU169 4.1 8.9 1.0
CD2 A:HIS173 4.1 16.4 1.0
CD2 J:HIS173 4.3 19.1 1.0
CD1 A:LEU169 4.8 8.2 1.0
CG A:LEU169 4.9 8.6 1.0
CD1 J:LEU169 5.0 9.2 1.0
ND1 A:HIS173 5.0 16.3 1.0

Iron binding site 2 out of 4 in 3wnw

Go back to Iron Binding Sites List in 3wnw
Iron binding site 2 out of 4 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:32.0
occ:0.50
NE2 F:HIS173 3.1 19.9 1.0
NE2 B:HIS173 3.1 24.0 1.0
CE1 F:HIS173 3.8 19.4 1.0
CE1 B:HIS173 3.8 23.6 1.0
CD2 B:LEU169 3.8 9.2 1.0
CD2 F:LEU169 3.9 9.7 1.0
CD2 F:HIS173 4.1 19.1 1.0
CD2 B:HIS173 4.2 21.0 1.0
ND1 F:HIS173 5.0 18.4 1.0
CD1 B:LEU169 5.0 9.3 1.0
CG B:LEU169 5.0 9.3 1.0

Iron binding site 3 out of 4 in 3wnw

Go back to Iron Binding Sites List in 3wnw
Iron binding site 3 out of 4 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe203

b:33.1
occ:1.00
NE2 C:HIS173 3.2 19.9 1.0
NE2 I:HIS173 3.2 22.5 1.0
NE2 E:HIS173 3.3 19.3 1.0
NE2 K:HIS173 3.3 22.6 1.0
CD2 C:LEU169 3.8 12.7 1.0
CD2 K:LEU169 3.8 7.8 1.0
CD2 E:LEU169 3.9 10.5 1.0
CE1 I:HIS173 4.0 23.5 1.0
CD2 I:LEU169 4.0 8.4 1.0
CD2 C:HIS173 4.0 20.1 1.0
CE1 E:HIS173 4.2 20.2 1.0
CE1 C:HIS173 4.2 20.4 1.0
CD2 E:HIS173 4.2 19.0 1.0
CD2 K:HIS173 4.2 23.0 1.0
CE1 K:HIS173 4.2 22.7 1.0
CD2 I:HIS173 4.2 21.5 1.0
CD1 K:LEU169 4.7 7.5 1.0
CD1 C:LEU169 4.7 12.1 1.0
CD1 I:LEU169 4.8 9.2 1.0
CG C:LEU169 4.8 12.2 1.0
CG K:LEU169 4.8 7.8 1.0
CD1 E:LEU169 4.8 12.7 1.0
CG E:LEU169 4.9 11.4 1.0
CG I:LEU169 5.0 8.7 1.0

Iron binding site 4 out of 4 in 3wnw

Go back to Iron Binding Sites List in 3wnw
Iron binding site 4 out of 4 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe202

b:34.5
occ:0.50
NE2 H:HIS173 3.1 18.0 1.0
NE2 L:HIS173 3.2 19.9 1.0
CE1 H:HIS173 3.7 19.1 1.0
CD2 L:LEU169 3.9 9.2 1.0
CD2 H:LEU169 3.9 9.4 1.0
CE1 L:HIS173 4.0 19.9 1.0
CD2 L:HIS173 4.2 19.1 1.0
CD2 H:HIS173 4.3 17.8 1.0
CD1 H:LEU169 4.8 9.4 1.0
CD1 L:LEU169 4.9 8.7 1.0
CG L:LEU169 4.9 9.2 1.0
CG H:LEU169 5.0 9.4 1.0
ND1 H:HIS173 5.0 18.9 1.0

Reference:

R.Zarivach, L.Lewin. Studies of Ferritin-M6A To Be Published.
Page generated: Sun Aug 4 22:43:02 2024

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