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Iron in PDB 3wrk: Crystal Structure of P450CAM

Enzymatic activity of Crystal Structure of P450CAM

All present enzymatic activity of Crystal Structure of P450CAM:
1.14.15.1;

Protein crystallography data

The structure of Crystal Structure of P450CAM, PDB code: 3wrk was solved by A.Kishimoto, K.Takagi, A.Amano, K.Sakurai, T.Mizushima, H.Shimada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.40 / 2.61
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.339, 93.188, 73.828, 90.00, 89.92, 90.00
R / Rfree (%) 17.4 / 23.5

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of P450CAM (pdb code 3wrk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of P450CAM, PDB code: 3wrk:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3wrk

Go back to Iron Binding Sites List in 3wrk
Iron binding site 1 out of 2 in the Crystal Structure of P450CAM


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of P450CAM within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:16.9
occ:1.00
FE A:HEM501 0.0 16.9 1.0
NC A:HEM501 1.9 23.9 1.0
NA A:HEM501 2.0 17.2 1.0
NB A:HEM501 2.1 11.7 1.0
ND A:HEM501 2.1 18.1 1.0
SG A:CYS357 2.3 18.5 1.0
C1C A:HEM501 2.9 15.1 1.0
C4C A:HEM501 2.9 15.2 1.0
C1A A:HEM501 3.0 12.5 1.0
C4A A:HEM501 3.0 13.4 1.0
C4B A:HEM501 3.1 16.7 1.0
C1D A:HEM501 3.1 21.3 1.0
CB A:CYS357 3.1 18.6 1.0
C1B A:HEM501 3.2 11.9 1.0
C4D A:HEM501 3.2 19.2 1.0
CHC A:HEM501 3.4 15.2 1.0
CHD A:HEM501 3.5 16.6 1.0
CHB A:HEM501 3.5 16.1 1.0
CHA A:HEM501 3.6 15.7 1.0
CA A:CYS357 4.0 12.5 1.0
C5 A:CAM502 4.0 22.8 0.6
C3C A:HEM501 4.2 13.8 1.0
C2C A:HEM501 4.2 12.7 1.0
C2A A:HEM501 4.3 19.2 1.0
C3A A:HEM501 4.3 12.6 1.0
O A:GLY248 4.4 18.4 1.0
C3B A:HEM501 4.4 19.0 1.0
C2D A:HEM501 4.5 20.7 1.0
C4 A:CAM502 4.5 20.6 0.6
C2B A:HEM501 4.5 14.9 1.0
C3D A:HEM501 4.5 15.0 1.0
N A:GLY359 4.6 17.1 1.0
C A:CYS357 4.7 17.5 1.0
N A:LEU358 4.8 16.3 1.0
CA A:GLY359 5.0 11.6 1.0

Iron binding site 2 out of 2 in 3wrk

Go back to Iron Binding Sites List in 3wrk
Iron binding site 2 out of 2 in the Crystal Structure of P450CAM


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of P450CAM within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe501

b:16.0
occ:1.00
FE D:HEM501 0.0 16.0 1.0
NC D:HEM501 2.0 20.9 1.0
NA D:HEM501 2.0 19.4 1.0
NB D:HEM501 2.1 12.7 1.0
ND D:HEM501 2.1 17.7 1.0
SG D:CYS357 2.4 15.5 1.0
C1C D:HEM501 2.9 15.1 1.0
C4C D:HEM501 3.0 12.3 1.0
C1A D:HEM501 3.0 11.7 1.0
C4A D:HEM501 3.0 11.1 1.0
C4B D:HEM501 3.1 14.4 1.0
C1D D:HEM501 3.1 15.6 1.0
CB D:CYS357 3.2 17.1 1.0
C1B D:HEM501 3.2 11.6 1.0
C4D D:HEM501 3.2 16.1 1.0
CHC D:HEM501 3.4 13.1 1.0
CHD D:HEM501 3.5 15.5 1.0
CHB D:HEM501 3.5 13.7 1.0
CHA D:HEM501 3.5 14.6 1.0
C10 D:CAM502 3.7 22.9 0.7
CA D:CYS357 4.0 13.4 1.0
C3C D:HEM501 4.2 10.2 1.0
C2C D:HEM501 4.2 13.1 1.0
C2A D:HEM501 4.3 15.4 1.0
C3A D:HEM501 4.3 10.0 1.0
C3B D:HEM501 4.4 16.7 1.0
O D:GLY248 4.4 15.7 1.0
C2D D:HEM501 4.5 18.8 1.0
C2B D:HEM501 4.5 12.6 1.0
C3D D:HEM501 4.5 15.1 1.0
N D:GLY359 4.5 17.7 1.0
C D:CYS357 4.7 17.6 1.0
N D:LEU358 4.8 15.4 1.0
C6 D:CAM502 4.8 17.4 0.7
C1 D:CAM502 4.8 19.2 0.7
CA D:GLY359 4.9 12.8 1.0

Reference:

A.Kishimoto, K.Takagi, A.Amano, K.Sakurai, Y.Katayama, R.Aminaka, M.Ito, T.Mizushima, H.Shimada. Structure of P450CAM Intermedite To Be Published.
Page generated: Tue Aug 5 08:27:09 2025

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