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Iron in PDB 4cuo: Banyan Peroxidase with Glycosylation

Enzymatic activity of Banyan Peroxidase with Glycosylation

All present enzymatic activity of Banyan Peroxidase with Glycosylation:
1.11.1.7;

Protein crystallography data

The structure of Banyan Peroxidase with Glycosylation, PDB code: 4cuo was solved by G.J.Palm, A.Sharma, W.Hinrichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.32 / 1.67
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.115, 73.115, 164.596, 90.00, 90.00, 120.00
R / Rfree (%) 15.654 / 18.029

Other elements in 4cuo:

The structure of Banyan Peroxidase with Glycosylation also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Calcium (Ca) 2 atoms
Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Banyan Peroxidase with Glycosylation (pdb code 4cuo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Banyan Peroxidase with Glycosylation, PDB code: 4cuo:

Iron binding site 1 out of 1 in 4cuo

Go back to Iron Binding Sites List in 4cuo
Iron binding site 1 out of 1 in the Banyan Peroxidase with Glycosylation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Banyan Peroxidase with Glycosylation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1307

b:27.9
occ:1.00
FE A:HEM1307 0.0 27.9 1.0
ND A:HEM1307 2.0 28.1 1.0
NA A:HEM1307 2.0 27.1 1.0
NB A:HEM1307 2.1 30.3 1.0
NC A:HEM1307 2.1 27.2 1.0
NE2 A:HIS169 2.2 26.4 1.0
CL A:CL1329 2.6 29.9 0.3
C4D A:HEM1307 3.0 26.1 1.0
C1D A:HEM1307 3.0 28.0 1.0
C4B A:HEM1307 3.0 26.8 1.0
C4A A:HEM1307 3.1 26.8 1.0
C4C A:HEM1307 3.1 26.2 1.0
C1B A:HEM1307 3.1 28.2 1.0
CE1 A:HIS169 3.1 28.3 1.0
C1A A:HEM1307 3.1 26.8 1.0
C1C A:HEM1307 3.1 29.6 1.0
CD2 A:HIS169 3.1 26.4 1.0
CHD A:HEM1307 3.4 28.7 1.0
CHA A:HEM1307 3.5 26.1 1.0
CHB A:HEM1307 3.5 28.9 1.0
CHC A:HEM1307 3.5 28.1 1.0
O A:HOH2060 3.8 31.4 0.7
C2D A:HEM1307 4.2 27.7 1.0
C3D A:HEM1307 4.2 26.2 1.0
ND1 A:HIS169 4.2 27.0 1.0
C2B A:HEM1307 4.3 29.4 1.0
C3A A:HEM1307 4.3 27.6 1.0
C3B A:HEM1307 4.3 29.0 1.0
C3C A:HEM1307 4.3 26.9 1.0
C2A A:HEM1307 4.3 27.7 1.0
CG A:HIS169 4.3 25.8 1.0
C2C A:HEM1307 4.3 27.4 1.0
NE A:ARG38 4.5 27.2 1.0
CE2 A:PHE41 4.5 31.7 1.0
CD2 A:PHE41 4.8 29.2 1.0
CD A:ARG38 4.9 26.4 1.0

Reference:

G.J.Palm, A.Sharma, M.Kumari, S.Panjikar, D.Albrecht, M.V.Jagannadham, W.Hinrichs. Post-Translational Modification and Extended Glycosylation Pattern of A Plant Latex Peroxidase of Native Source Characterized By X-Ray Crystallography. Febs J. V. 281 4319 2014.
ISSN: ISSN 1742-464X
PubMed: 24980207
DOI: 10.1111/FEBS.12900
Page generated: Mon Aug 5 00:57:12 2024

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