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Iron in PDB 4cvp: Structure of Apobacterioferritin

Enzymatic activity of Structure of Apobacterioferritin

All present enzymatic activity of Structure of Apobacterioferritin:
1.16.3.1;

Protein crystallography data

The structure of Structure of Apobacterioferritin, PDB code: 4cvp was solved by K.Hingorani, R.Pace, S.Whitney, J.W.Murray, T.Wydrzynski, M.H.Cheah, P.Smith, W.Hillier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.64 / 2.11
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.970, 28.300, 54.470, 90.00, 103.48, 90.00
R / Rfree (%) 21.573 / 29.877

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Apobacterioferritin (pdb code 4cvp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Apobacterioferritin, PDB code: 4cvp:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4cvp

Go back to Iron Binding Sites List in 4cvp
Iron binding site 1 out of 2 in the Structure of Apobacterioferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Apobacterioferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1155

b:66.0
occ:1.00
OE1 A:GLU51 2.1 38.9 1.0
OE2 A:GLU127 2.2 33.0 1.0
OE1 A:GLU18 2.3 36.1 1.0
OE2 A:GLU18 2.3 41.5 1.0
ND1 A:HIS54 2.4 26.6 1.0
CD A:GLU18 2.6 34.5 1.0
O A:HOH2006 2.8 31.7 1.0
CD A:GLU127 3.1 29.9 1.0
CD A:GLU51 3.2 34.9 1.0
CE1 A:HIS54 3.2 26.1 1.0
OE1 A:GLU127 3.2 32.2 1.0
CG A:HIS54 3.4 26.4 1.0
OE2 A:GLU51 3.7 36.1 1.0
CB A:HIS54 3.8 24.9 1.0
O A:HOH2007 3.9 32.4 1.0
CG A:GLU18 4.1 33.8 1.0
O A:HOH2008 4.2 22.8 1.0
CA A:GLU51 4.3 34.2 1.0
FE A:FE1156 4.3 73.1 1.0
CG A:GLU51 4.3 34.2 1.0
CB A:GLU51 4.3 33.3 1.0
CG2 A:ILE123 4.3 24.1 1.0
NE2 A:HIS54 4.4 25.9 1.0
CG A:GLU127 4.5 29.7 1.0
CD2 A:HIS54 4.5 26.0 1.0
CB A:GLU18 4.9 29.4 1.0
O A:GLU51 5.0 33.6 1.0

Iron binding site 2 out of 2 in 4cvp

Go back to Iron Binding Sites List in 4cvp
Iron binding site 2 out of 2 in the Structure of Apobacterioferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Apobacterioferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1156

b:73.1
occ:1.00
OE2 A:GLU51 2.0 36.1 1.0
OE1 A:GLU127 2.4 32.2 1.0
OE2 A:GLU94 2.5 38.1 1.0
OE1 A:GLU94 2.8 37.7 1.0
CD A:GLU94 2.9 33.2 1.0
CD A:GLU51 3.0 34.9 1.0
OE1 A:GLU51 3.2 38.9 1.0
OE2 A:GLU47 3.2 44.0 1.0
CD A:GLU127 3.6 29.9 1.0
O A:HOH2006 3.9 31.7 1.0
CD2 A:HIS130 4.2 35.8 1.0
CD A:GLU47 4.2 40.0 1.0
CB A:HIS130 4.2 30.7 1.0
OE2 A:GLU127 4.3 33.0 1.0
CG A:GLU51 4.3 34.2 1.0
FE A:FE1155 4.3 66.0 1.0
CA A:GLU127 4.3 29.0 1.0
CG A:GLU47 4.4 38.2 1.0
CG A:GLU94 4.4 30.6 1.0
OH A:TYR25 4.4 34.1 1.0
CE2 A:TYR25 4.5 32.9 1.0
CG A:HIS130 4.5 34.4 1.0
O A:HOH2032 4.6 25.8 1.0
CB A:GLU127 4.7 28.9 1.0
CG A:GLU127 4.8 29.7 1.0
O A:GLU127 4.9 27.1 1.0
CZ A:TYR25 5.0 33.2 1.0
N A:GLU127 5.0 29.2 1.0

Reference:

K.Hingorani, R.Pace, S.Whitney, J.W.Murray, P.Smith, M.H.Cheah, T.Wydrzynski, W.Hillier. Photo-Oxidation of Tyrosine in A Bio-Engineered Bacterioferritin 'Reaction Centre'-A Protein Model For Artificial Photosynthesis. Biochim.Biophys.Acta V.1837 1821 2014.
ISSN: ISSN 0006-3002
PubMed: 25107631
DOI: 10.1016/J.BBABIO.2014.07.019
Page generated: Mon Aug 5 00:57:12 2024

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