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Iron in PDB 4czq: Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium

Enzymatic activity of Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium

All present enzymatic activity of Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium:
1.11.1.13;

Protein crystallography data

The structure of Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium, PDB code: 4czq was solved by F.J.Medrano, A.Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.349 / 1.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 108.620, 108.620, 68.320, 90.00, 90.00, 90.00
R / Rfree (%) 15.09 / 16.19

Other elements in 4czq:

The structure of Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium also contains other interesting chemical elements:

Cadmium (Cd) 3 atoms
Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium (pdb code 4czq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium, PDB code: 4czq:

Iron binding site 1 out of 1 in 4czq

Go back to Iron Binding Sites List in 4czq
Iron binding site 1 out of 1 in the Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Extralong Fungal Manganese Peroxidase From Ceriporiopsis Subvermispora in Complex with Cadmium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1372

b:13.9
occ:1.00
FE A:HEM1372 0.0 13.9 1.0
NC A:HEM1372 2.0 13.7 1.0
NB A:HEM1372 2.1 14.2 1.0
NA A:HEM1372 2.1 14.5 1.0
ND A:HEM1372 2.1 14.1 1.0
NE2 A:HIS173 2.2 13.8 1.0
C1C A:HEM1372 3.0 13.5 1.0
C4B A:HEM1372 3.1 14.2 1.0
C4C A:HEM1372 3.1 13.5 1.0
C1D A:HEM1372 3.1 13.9 1.0
C4D A:HEM1372 3.1 13.9 1.0
C4A A:HEM1372 3.1 14.4 1.0
C1B A:HEM1372 3.1 14.3 1.0
C1A A:HEM1372 3.1 14.1 1.0
CE1 A:HIS173 3.1 13.4 1.0
CD2 A:HIS173 3.2 13.4 1.0
HE1 A:HIS173 3.2 16.1 1.0
HD2 A:HIS173 3.3 16.0 1.0
CHC A:HEM1372 3.4 14.2 1.0
CHD A:HEM1372 3.4 13.6 1.0
CHA A:HEM1372 3.4 14.4 1.0
CHB A:HEM1372 3.4 14.3 1.0
ND1 A:HIS173 4.2 13.6 1.0
C2D A:HEM1372 4.3 14.2 1.0
C3D A:HEM1372 4.3 14.3 1.0
C3B A:HEM1372 4.3 15.0 1.0
C2C A:HEM1372 4.3 14.1 1.0
C3C A:HEM1372 4.3 14.1 1.0
C2B A:HEM1372 4.3 15.2 1.0
CG A:HIS173 4.3 13.1 1.0
C3A A:HEM1372 4.3 14.6 1.0
C2A A:HEM1372 4.3 14.4 1.0
O A:HOH2079 4.3 28.7 1.0
HG3 A:ARG42 4.3 19.6 1.0
HHC A:HEM1372 4.4 17.0 1.0
HE2 A:PHE190 4.4 17.1 1.0
HD11 A:LEU170 4.4 18.1 1.0
HHA A:HEM1372 4.4 17.3 1.0
HHB A:HEM1372 4.4 17.2 1.0
HHD A:HEM1372 4.4 16.3 1.0
HD12 A:LEU170 4.5 18.1 1.0
HG A:SER172 4.6 20.1 1.0
HD2 A:PHE45 4.7 24.2 1.0
CD1 A:LEU170 4.9 15.1 1.0
OG A:SER172 5.0 16.7 1.0

Reference:

E.Fernandez-Fueyo, S.Acebes, F.J.Ruiz-Duenas, M.J.Martinez, A.Romero, F.J.Medrano, V.Guallar, A.T.Martinez. Structural Implications of the C-Terminal Tail in the Catalytic and Stability Properties of Manganese Peroxidases From Ligninolytic Fungi Acta Crystallogr.,Sect.D V. 70 3253 2014.
ISSN: ISSN 0907-4449
PubMed: 25478843
DOI: 10.1107/S1399004714022755
Page generated: Tue Aug 5 09:41:17 2025

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