Atomistry » Iron » PDB 4d37-4di0 » 4d4o
Atomistry »
  Iron »
    PDB 4d37-4di0 »
      4d4o »

Iron in PDB 4d4o: Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64

Protein crystallography data

The structure of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64, PDB code: 4d4o was solved by S.Glatt, C.W.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.635 / 2.90
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 151.270, 151.270, 107.140, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 21.88

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64 (pdb code 4d4o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64, PDB code: 4d4o:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4d4o

Go back to Iron Binding Sites List in 4d4o
Iron binding site 1 out of 2 in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:45.2
occ:1.00
SG A:CYS390 2.3 51.3 1.0
SG A:CYS368 2.3 32.8 1.0
SG A:CYS393 2.4 34.5 1.0
SG A:CYS370 2.4 33.9 1.0
CB A:CYS368 3.3 33.8 1.0
CB A:CYS390 3.4 51.3 1.0
CB A:CYS370 3.4 33.5 1.0
CB A:CYS393 3.6 33.5 1.0
N A:CYS393 3.8 34.8 1.0
CB A:ASP372 4.1 39.4 1.0
CA A:CYS393 4.3 34.1 1.0
CB A:SER392 4.4 45.9 1.0
N A:CYS370 4.4 35.3 1.0
CA A:CYS370 4.5 34.7 1.0
N A:ASP372 4.7 39.6 1.0
CH2 B:TRP294 4.7 36.9 1.0
CA A:CYS368 4.7 34.1 1.0
CA A:CYS390 4.8 52.4 1.0
CA A:ASP372 4.8 39.9 1.0
C A:SER392 4.9 45.0 1.0
C A:CYS393 4.9 34.3 1.0
C A:CYS368 4.9 34.0 1.0
NE2 B:HIS297 5.0 40.0 1.0

Iron binding site 2 out of 2 in 4d4o

Go back to Iron Binding Sites List in 4d4o
Iron binding site 2 out of 2 in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P64 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:47.4
occ:1.00
SG C:CYS393 1.8 35.8 1.0
SG C:CYS368 2.1 31.4 1.0
SG C:CYS390 2.4 32.2 1.0
SG C:CYS370 2.4 33.7 1.0
CB C:CYS393 3.1 35.8 1.0
CB C:CYS390 3.3 32.8 1.0
CB C:CYS368 3.3 32.0 1.0
CB C:CYS370 3.7 32.8 1.0
CA C:CYS393 4.2 76.9 1.0
CB C:ASP372 4.3 25.1 1.0
N C:CYS393 4.3 78.8 1.0
N C:CYS370 4.5 33.1 1.0
CA C:CYS368 4.6 32.0 1.0
CA C:CYS370 4.7 32.6 1.0
C C:SER392 4.7 39.0 1.0
CA C:CYS390 4.7 33.7 1.0
C C:CYS368 4.8 31.1 1.0
CH2 A:TRP294 4.8 26.2 1.0
C C:CYS393 4.9 76.6 1.0
N C:ASP372 4.9 24.8 1.0

Reference:

S.Glatt, R.Zabel, I.Vonkova, A.Kumar, D.J.Netz, A.J.Pierik, V.Rybin, R.Lill, A.Gavin, J.Balbach, K.D.Breunig, C.W.Muller. Structure of the KTI11/KTI13 Heterodimer and Its Double Role in Modifications of Trna and Eukaryotic Elongation Factor 2. Structure V. 23 7 2015.
ISSN: ISSN 0969-2126
PubMed: 25543256
DOI: 10.1016/J.STR.2014.11.008
Page generated: Tue Aug 5 09:44:58 2025

Last articles

Zn in 9QM9
Zn in 9S44
Zn in 9OFE
Zn in 9OFC
Zn in 9OFD
Zn in 9OF1
Zn in 9OFB
Zn in 9N0J
Zn in 9M5X
Zn in 9LGI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy