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Iron in PDB 4dig: Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution

Protein crystallography data

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution, PDB code: 4dig was solved by P.K.Shukla, L.Gautam, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.27 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.550, 49.951, 65.129, 90.00, 107.03, 90.00
R / Rfree (%) 17.4 / 21.6

Other elements in 4dig:

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution (pdb code 4dig). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution, PDB code: 4dig:

Iron binding site 1 out of 1 in 4dig

Go back to Iron Binding Sites List in 4dig
Iron binding site 1 out of 1 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe706

b:13.3
occ:1.00
OH A:TYR433 2.1 12.5 1.0
OH A:TYR526 2.1 12.4 1.0
O2 A:CO3709 2.1 13.2 1.0
OD1 A:ASP395 2.1 12.1 1.0
NE2 A:HIS595 2.2 12.8 1.0
O1 A:CO3709 2.2 10.9 1.0
C A:CO3709 2.5 12.4 1.0
CZ A:TYR433 3.1 11.7 1.0
CZ A:TYR526 3.1 14.3 1.0
CD2 A:HIS595 3.1 11.4 1.0
CE1 A:HIS595 3.2 12.0 1.0
CG A:ASP395 3.2 11.5 1.0
CE1 A:TYR433 3.6 11.6 1.0
CB A:ASP395 3.7 11.6 1.0
O3 A:CO3709 3.7 12.9 1.0
CE1 A:TYR526 3.8 13.8 1.0
O A:HOH839 3.8 12.7 1.0
O A:HOH821 3.9 14.0 1.0
CE2 A:TYR526 4.0 13.6 1.0
CE2 A:TYR433 4.1 13.3 1.0
OD2 A:ASP395 4.2 15.6 1.0
NH2 A:ARG463 4.3 16.6 1.0
CG A:HIS595 4.3 12.1 1.0
ND1 A:HIS595 4.3 12.6 1.0
CB A:THR464 4.4 10.0 1.0
CA A:ASP395 4.4 10.6 1.0
N A:THR464 4.6 11.0 1.0
NE A:ARG463 4.7 13.5 1.0
N A:ALA465 4.7 11.3 1.0
OG1 A:THR464 4.7 10.5 1.0
CD1 A:TYR433 4.9 11.3 1.0
N A:GLY396 5.0 11.4 1.0
CZ A:ARG463 5.0 16.4 1.0

Reference:

P.K.Shukla, L.Gautam, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N-Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution To Be Published.
Page generated: Tue Aug 5 09:49:36 2025

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