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Iron in PDB 4dwu: Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution

Protein crystallography data

The structure of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution, PDB code: 4dwu was solved by V.S.De Serrano, J.Zhao, S.Franzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.20 / 1.44
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.922, 67.622, 68.391, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20.2

Iron Binding Sites:

The binding sites of Iron atom in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution (pdb code 4dwu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution, PDB code: 4dwu:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4dwu

Go back to Iron Binding Sites List in 4dwu
Iron binding site 1 out of 2 in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:11.6
occ:1.00
FE A:HEM201 0.0 11.6 1.0
C A:CMO202 1.9 13.8 1.0
NC A:HEM201 2.0 11.9 1.0
NA A:HEM201 2.0 13.1 1.0
NE2 A:HIS89 2.1 14.4 1.0
ND A:HEM201 2.1 13.5 1.0
NB A:HEM201 2.1 11.3 1.0
O A:CMO202 3.0 12.3 1.0
CE1 A:HIS89 3.0 14.0 1.0
CD2 A:HIS89 3.1 15.0 1.0
C4B A:HEM201 3.1 11.7 1.0
C4C A:HEM201 3.1 12.4 1.0
C1D A:HEM201 3.1 13.8 1.0
C1C A:HEM201 3.1 11.9 1.0
C4A A:HEM201 3.1 13.1 1.0
C4D A:HEM201 3.1 14.2 1.0
C1A A:HEM201 3.1 14.0 1.0
C1B A:HEM201 3.1 11.7 1.0
CHC A:HEM201 3.5 11.3 1.0
CHD A:HEM201 3.5 13.0 1.0
CHB A:HEM201 3.5 11.9 1.0
CHA A:HEM201 3.6 13.6 1.0
ND1 A:HIS89 4.2 14.6 1.0
CG A:HIS89 4.2 15.5 1.0
C3C A:HEM201 4.3 12.5 1.0
C3B A:HEM201 4.4 11.0 1.0
C2C A:HEM201 4.4 11.7 1.0
C2A A:HEM201 4.4 14.9 1.0
C3A A:HEM201 4.4 13.6 1.0
C2D A:HEM201 4.4 15.0 1.0
C3D A:HEM201 4.4 15.9 1.0
C2B A:HEM201 4.4 11.6 1.0
CG2 A:VAL59 4.5 12.1 1.0
CE A:MET86 4.7 15.7 0.6
CG1 A:VAL59 4.7 10.0 1.0

Iron binding site 2 out of 2 in 4dwu

Go back to Iron Binding Sites List in 4dwu
Iron binding site 2 out of 2 in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 1.44 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:9.1
occ:1.00
FE B:HEM201 0.0 9.1 1.0
C B:CMO202 1.9 9.6 0.8
NC B:HEM201 2.0 9.9 1.0
NA B:HEM201 2.0 9.9 1.0
ND B:HEM201 2.1 10.6 1.0
NB B:HEM201 2.1 9.2 1.0
NE2 B:HIS89 2.2 10.2 1.0
O B:CMO202 3.0 9.4 0.8
C4C B:HEM201 3.0 10.3 1.0
C1D B:HEM201 3.0 11.4 1.0
C1A B:HEM201 3.0 11.2 1.0
C4B B:HEM201 3.1 9.6 1.0
C1C B:HEM201 3.1 10.0 1.0
C4D B:HEM201 3.1 12.1 1.0
CE1 B:HIS89 3.1 10.4 1.0
C4A B:HEM201 3.1 9.7 1.0
C1B B:HEM201 3.1 9.2 1.0
CD2 B:HIS89 3.2 11.2 1.0
CHD B:HEM201 3.4 11.0 1.0
CHC B:HEM201 3.5 9.4 1.0
CHA B:HEM201 3.5 11.5 1.0
CHB B:HEM201 3.6 9.8 1.0
ND1 B:HIS89 4.3 10.9 1.0
C3C B:HEM201 4.3 10.8 1.0
C2A B:HEM201 4.3 11.1 1.0
CG B:HIS89 4.3 11.5 1.0
CG2 B:VAL59 4.3 8.0 1.0
C2C B:HEM201 4.3 10.1 1.0
C2D B:HEM201 4.3 12.5 1.0
C3B B:HEM201 4.4 9.4 1.0
C3A B:HEM201 4.4 10.2 1.0
C3D B:HEM201 4.4 13.8 1.0
C2B B:HEM201 4.4 9.5 1.0
CG1 B:VAL59 4.8 7.8 1.0
NE2 B:HIS55 4.9 12.8 0.2
CE B:MET86 4.9 15.3 1.0

Reference:

V.S.De Serrano, J.Zhao, S.Franzen. A Unique Role For the Distal Histidine Observed in Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structures To Be Published.
Page generated: Mon Aug 5 01:28:35 2024

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