Atomistry » Iron » PDB 4dig-4egm » 4e37
Atomistry »
  Iron »
    PDB 4dig-4egm »
      4e37 »

Iron in PDB 4e37: Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer

Enzymatic activity of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer

All present enzymatic activity of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer:
1.11.1.6;

Protein crystallography data

The structure of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer, PDB code: 4e37 was solved by B.D.Vanderwielen, J.J.Wilson, R.A.Kovall, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.46 / 2.53
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.733, 167.427, 90.547, 90.00, 111.40, 90.00
R / Rfree (%) 17.4 / 20.1

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer (pdb code 4e37). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer, PDB code: 4e37:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 4e37

Go back to Iron Binding Sites List in 4e37
Iron binding site 1 out of 4 in the Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:41.3
occ:1.00
FE A:HEM500 0.0 41.3 1.0
ND A:HEM500 2.1 20.4 1.0
NA A:HEM500 2.1 24.1 1.0
NB A:HEM500 2.1 25.2 1.0
NC A:HEM500 2.1 23.4 1.0
OH A:TYR338 2.3 24.5 1.0
C4D A:HEM500 3.0 21.5 1.0
C1A A:HEM500 3.1 23.4 1.0
C1D A:HEM500 3.1 21.6 1.0
C4A A:HEM500 3.1 23.0 1.0
C1B A:HEM500 3.1 25.2 1.0
C4C A:HEM500 3.1 22.6 1.0
C4B A:HEM500 3.1 23.9 1.0
C1C A:HEM500 3.1 24.2 1.0
CZ A:TYR338 3.2 22.8 1.0
CHA A:HEM500 3.4 22.4 1.0
CHB A:HEM500 3.4 24.5 1.0
CHD A:HEM500 3.4 22.8 1.0
CHC A:HEM500 3.5 23.2 1.0
CE2 A:TYR338 3.9 22.7 1.0
O A:HOH628 4.0 25.8 1.0
CE1 A:TYR338 4.0 25.8 1.0
C3D A:HEM500 4.3 21.1 1.0
C2A A:HEM500 4.3 23.4 1.0
NE A:ARG334 4.3 23.7 1.0
C3A A:HEM500 4.3 23.7 1.0
C2D A:HEM500 4.3 21.1 1.0
C2B A:HEM500 4.3 24.4 1.0
C3B A:HEM500 4.3 24.9 1.0
C3C A:HEM500 4.3 22.7 1.0
C2C A:HEM500 4.4 23.6 1.0
CD2 A:HIS55 4.4 21.7 1.0
NH2 A:ARG334 4.4 19.6 1.0
NE2 A:HIS55 4.4 22.7 1.0
CZ A:PHE141 4.4 24.8 1.0
CZ A:ARG334 4.7 21.9 1.0
CB A:OMT54 5.0 27.8 1.0

Iron binding site 2 out of 4 in 4e37

Go back to Iron Binding Sites List in 4e37
Iron binding site 2 out of 4 in the Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:41.4
occ:1.00
FE B:HEM500 0.0 41.4 1.0
NB B:HEM500 2.1 28.6 1.0
ND B:HEM500 2.1 26.3 1.0
NC B:HEM500 2.1 27.6 1.0
NA B:HEM500 2.1 26.8 1.0
OH B:TYR338 2.2 25.6 1.0
C1D B:HEM500 3.1 25.9 1.0
C4C B:HEM500 3.1 26.3 1.0
C4B B:HEM500 3.1 26.6 1.0
C1B B:HEM500 3.1 27.3 1.0
C1C B:HEM500 3.1 25.8 1.0
C4A B:HEM500 3.1 24.8 1.0
C4D B:HEM500 3.1 24.8 1.0
C1A B:HEM500 3.1 23.7 1.0
CZ B:TYR338 3.2 23.9 1.0
CHD B:HEM500 3.4 25.7 1.0
CHC B:HEM500 3.4 25.8 1.0
CHB B:HEM500 3.5 24.7 1.0
CHA B:HEM500 3.5 24.8 1.0
CE2 B:TYR338 4.0 21.1 1.0
O B:HOH671 4.0 30.8 1.0
CE1 B:TYR338 4.0 26.4 1.0
NE B:ARG334 4.2 21.5 1.0
C3C B:HEM500 4.3 25.0 1.0
C3B B:HEM500 4.3 24.8 1.0
C2D B:HEM500 4.3 24.0 1.0
NH2 B:ARG334 4.3 21.2 1.0
C2C B:HEM500 4.3 24.8 1.0
C2B B:HEM500 4.3 26.9 1.0
C3D B:HEM500 4.3 24.9 1.0
C3A B:HEM500 4.3 27.9 1.0
C2A B:HEM500 4.3 25.7 1.0
CD2 B:HIS55 4.4 24.5 1.0
NE2 B:HIS55 4.4 24.8 1.0
CZ B:PHE141 4.5 30.7 1.0
CZ B:ARG334 4.7 23.1 1.0

Iron binding site 3 out of 4 in 4e37

Go back to Iron Binding Sites List in 4e37
Iron binding site 3 out of 4 in the Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe500

b:45.5
occ:1.00
FE C:HEM500 0.0 45.5 1.0
ND C:HEM500 2.1 27.4 1.0
NC C:HEM500 2.1 28.6 1.0
NB C:HEM500 2.1 26.8 1.0
NA C:HEM500 2.2 26.1 1.0
OH C:TYR338 2.3 26.9 1.0
C4C C:HEM500 3.1 25.6 1.0
C1D C:HEM500 3.1 26.6 1.0
C4B C:HEM500 3.1 26.4 1.0
C4D C:HEM500 3.1 27.8 1.0
C1C C:HEM500 3.1 25.1 1.0
C1A C:HEM500 3.1 27.4 1.0
C1B C:HEM500 3.2 27.5 1.0
C4A C:HEM500 3.2 26.4 1.0
CZ C:TYR338 3.3 26.4 1.0
CHD C:HEM500 3.4 24.8 1.0
CHC C:HEM500 3.4 28.8 1.0
CHA C:HEM500 3.5 27.7 1.0
CHB C:HEM500 3.5 28.3 1.0
O C:HOH670 3.7 30.1 1.0
CE1 C:TYR338 4.1 26.4 1.0
CE2 C:TYR338 4.1 23.7 1.0
C3C C:HEM500 4.3 26.0 1.0
NE C:ARG334 4.3 24.1 1.0
C2C C:HEM500 4.3 25.9 1.0
C2D C:HEM500 4.3 25.3 1.0
C3B C:HEM500 4.3 26.7 1.0
C3D C:HEM500 4.3 25.5 1.0
CZ C:PHE141 4.3 28.2 1.0
CD2 C:HIS55 4.3 28.1 1.0
C2B C:HEM500 4.4 26.6 1.0
NH2 C:ARG334 4.4 24.1 1.0
C2A C:HEM500 4.4 28.1 1.0
NE2 C:HIS55 4.4 26.9 1.0
C3A C:HEM500 4.4 28.9 1.0
CZ C:ARG334 4.7 23.9 1.0
CE1 C:PHE141 4.8 28.6 1.0
CB C:OMT54 4.9 34.5 1.0

Iron binding site 4 out of 4 in 4e37

Go back to Iron Binding Sites List in 4e37
Iron binding site 4 out of 4 in the Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of P. Aeruginosa Catalase, Kata Tetramer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe500

b:44.3
occ:1.00
FE D:HEM500 0.0 44.3 1.0
NC D:HEM500 2.1 27.6 1.0
NB D:HEM500 2.1 30.2 1.0
ND D:HEM500 2.1 25.6 1.0
NA D:HEM500 2.2 27.7 1.0
OH D:TYR338 2.2 29.3 1.0
C4C D:HEM500 3.0 27.9 1.0
C4B D:HEM500 3.0 30.2 1.0
C1D D:HEM500 3.1 27.9 1.0
C1C D:HEM500 3.1 26.3 1.0
C1B D:HEM500 3.1 28.1 1.0
C4D D:HEM500 3.1 24.7 1.0
C4A D:HEM500 3.2 27.1 1.0
C1A D:HEM500 3.2 27.3 1.0
CZ D:TYR338 3.3 26.8 1.0
CHD D:HEM500 3.4 26.1 1.0
CHC D:HEM500 3.4 25.4 1.0
CHB D:HEM500 3.5 29.9 1.0
CHA D:HEM500 3.5 27.0 1.0
CE2 D:TYR338 4.0 25.2 1.0
CE1 D:TYR338 4.1 26.5 1.0
NE D:ARG334 4.2 27.4 1.0
C3C D:HEM500 4.2 27.7 1.0
C3B D:HEM500 4.3 26.5 1.0
C2C D:HEM500 4.3 27.8 1.0
NH2 D:ARG334 4.3 23.5 1.0
C2B D:HEM500 4.3 26.5 1.0
C2D D:HEM500 4.3 26.7 1.0
C3D D:HEM500 4.3 25.6 1.0
C3A D:HEM500 4.4 29.1 1.0
C2A D:HEM500 4.4 26.8 1.0
CD2 D:HIS55 4.4 27.4 1.0
NE2 D:HIS55 4.4 27.3 1.0
CZ D:PHE141 4.4 30.0 1.0
CZ D:ARG334 4.6 25.5 1.0
CE1 D:PHE141 5.0 26.7 1.0

Reference:

S.Su, J.J.Wilson, W.Panmanee, T.Makris, J.D.Lipscomb, S.Kim, Y.Cho, R.T.Irvin, B.D.Vanderwielen, R.A.Kovall, D.J.Hassett. Kata, the Major Catalase in Pseudomonas Aeruginosa, Assists in Protecting Anaerobic Bacteria From Metabolic and Exogenous Nitric Oxide To Be Published.
Page generated: Mon Aug 5 01:30:12 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy