Atomistry » Iron » PDB 4egn-4f2n » 4ens
Atomistry »
  Iron »
    PDB 4egn-4f2n »
      4ens »

Iron in PDB 4ens: Structure of E530Q Variant of E. Coli Kate

Enzymatic activity of Structure of E530Q Variant of E. Coli Kate

All present enzymatic activity of Structure of E530Q Variant of E. Coli Kate:
1.11.1.6;

Protein crystallography data

The structure of Structure of E530Q Variant of E. Coli Kate, PDB code: 4ens was solved by P.C.Loewen, V.Jha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.19 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.450, 133.400, 123.240, 90.00, 109.18, 90.00
R / Rfree (%) 15.1 / 18.4

Iron Binding Sites:

The binding sites of Iron atom in the Structure of E530Q Variant of E. Coli Kate (pdb code 4ens). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of E530Q Variant of E. Coli Kate, PDB code: 4ens:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 1 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:7.3
occ:0.70
 FE A:HDD801 0.0 7.3 0.7
FE A:HEM802 0.3 5.8 0.3
NC A:HEM802 1.8 5.9 0.3
ND A:HEM802 1.9 5.4 0.3
ND A:HDD801 1.9 7.7 0.7
NA A:HEM802 2.0 5.7 0.3
NB A:HDD801 2.0 6.8 0.7
NA A:HDD801 2.1 6.5 0.7
OH A:TYR415 2.1 7.2 1.0
NC A:HDD801 2.1 6.9 0.7
O A:HOH1532 2.2 25.6 1.0
NB A:HEM802 2.3 6.3 0.3
C4C A:HEM802 2.9 5.7 0.3
C1D A:HEM802 2.9 5.2 0.3
C4D A:HEM802 3.0 5.0 0.3
C1C A:HEM802 3.0 6.0 0.3
C4D A:HDD801 3.0 8.0 0.7
C1D A:HDD801 3.0 8.6 0.7
C1A A:HDD801 3.0 6.4 0.7
CZ A:TYR415 3.0 7.9 1.0
C1A A:HEM802 3.0 5.4 0.3
C1B A:HDD801 3.1 6.2 0.7
C4B A:HDD801 3.1 6.5 0.7
C1C A:HDD801 3.1 7.0 0.7
C4C A:HDD801 3.1 6.9 0.7
C4A A:HDD801 3.1 6.1 0.7
C4A A:HEM802 3.2 5.7 0.3
C4B A:HEM802 3.2 6.4 0.3
C1B A:HEM802 3.3 6.4 0.3
CHD A:HEM802 3.3 5.5 0.3
CHA A:HDD801 3.4 6.9 0.7
CHD A:HDD801 3.4 8.1 0.7
CHA A:HEM802 3.4 5.2 0.3
CHC A:HDD801 3.5 6.9 0.7
CHB A:HDD801 3.5 5.9 0.7
CHC A:HEM802 3.6 6.3 0.3
CE1 A:TYR415 3.7 7.7 1.0
CHB A:HEM802 3.7 5.8 0.3
CE2 A:TYR415 4.0 7.7 1.0
C3C A:HEM802 4.2 5.8 0.3
NE A:ARG411 4.2 6.5 1.0
C2D A:HEM802 4.2 4.9 0.3
C2C A:HEM802 4.2 6.1 0.3
C3D A:HEM802 4.3 4.7 0.3
C3B A:HDD801 4.3 6.2 0.7
C2B A:HDD801 4.3 6.0 0.7
C2A A:HDD801 4.3 5.9 0.7
C3C A:HDD801 4.3 6.8 0.7
C2D A:HDD801 4.3 9.5 0.7
C2A A:HEM802 4.3 5.4 0.3
C3D A:HDD801 4.3 10.3 0.7
C3A A:HDD801 4.4 5.7 0.7
NH2 A:ARG411 4.4 6.5 1.0
C3A A:HEM802 4.4 5.5 0.3
C2C A:HDD801 4.4 7.0 0.7
CG2 A:VAL127 4.5 7.3 1.0
O A:HOH1174 4.5 15.6 1.0
C3B A:HEM802 4.5 6.7 0.3
C2B A:HEM802 4.6 6.8 0.3
CZ A:PHE214 4.6 6.9 1.0
CZ A:ARG411 4.6 6.5 1.0
CD2 A:HIS128 4.7 5.9 1.0
NE2 A:HIS128 4.7 6.5 1.0
CD1 A:TYR415 4.9 7.8 1.0

Iron binding site 2 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 2 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:5.8
occ:0.30
 FE A:HEM802 0.0 5.8 0.3
FE A:HDD801 0.3 7.3 0.7
OH A:TYR415 1.8 7.2 1.0
NB A:HDD801 1.8 6.8 0.7
NA A:HEM802 2.0 5.7 0.3
NC A:HEM802 2.0 5.9 0.3
NA A:HDD801 2.0 6.5 0.7
NB A:HEM802 2.1 6.3 0.3
ND A:HEM802 2.1 5.4 0.3
NC A:HDD801 2.2 6.9 0.7
ND A:HDD801 2.2 7.7 0.7
O A:HOH1532 2.4 25.6 1.0
C1B A:HDD801 2.8 6.2 0.7
CZ A:TYR415 2.9 7.9 1.0
C4B A:HDD801 2.9 6.5 0.7
C4A A:HDD801 3.0 6.1 0.7
C1C A:HEM802 3.0 6.0 0.3
C4A A:HEM802 3.0 5.7 0.3
C4C A:HEM802 3.1 5.7 0.3
C1A A:HDD801 3.1 6.4 0.7
C4B A:HEM802 3.1 6.4 0.3
C1A A:HEM802 3.1 5.4 0.3
C1C A:HDD801 3.1 7.0 0.7
C1B A:HEM802 3.1 6.4 0.3
C1D A:HEM802 3.2 5.2 0.3
C4D A:HEM802 3.2 5.0 0.3
C4D A:HDD801 3.2 8.0 0.7
C4C A:HDD801 3.2 6.9 0.7
C1D A:HDD801 3.3 8.6 0.7
CHB A:HDD801 3.3 5.9 0.7
CHC A:HDD801 3.4 6.9 0.7
CHC A:HEM802 3.5 6.3 0.3
CHA A:HDD801 3.5 6.9 0.7
CHB A:HEM802 3.5 5.8 0.3
CHD A:HEM802 3.5 5.5 0.3
CE1 A:TYR415 3.6 7.7 1.0
CHA A:HEM802 3.6 5.2 0.3
CHD A:HDD801 3.6 8.1 0.7
CE2 A:TYR415 3.8 7.7 1.0
NE A:ARG411 3.9 6.5 1.0
NH2 A:ARG411 4.0 6.5 1.0
C3B A:HDD801 4.1 6.2 0.7
C2B A:HDD801 4.1 6.0 0.7
C3C A:HEM802 4.3 5.8 0.3
C3A A:HDD801 4.3 5.7 0.7
C2C A:HEM802 4.3 6.1 0.3
C3A A:HEM802 4.3 5.5 0.3
CZ A:ARG411 4.3 6.5 1.0
C2A A:HDD801 4.3 5.9 0.7
C2A A:HEM802 4.3 5.4 0.3
C3B A:HEM802 4.3 6.7 0.3
C2B A:HEM802 4.4 6.8 0.3
C3C A:HDD801 4.4 6.8 0.7
C3D A:HEM802 4.5 4.7 0.3
C2D A:HEM802 4.5 4.9 0.3
C2C A:HDD801 4.5 7.0 0.7
O A:HOH1174 4.5 15.6 1.0
C3D A:HDD801 4.5 10.3 0.7
C2D A:HDD801 4.6 9.5 0.7
CG2 A:VAL127 4.8 7.3 1.0
CD1 A:TYR415 4.8 7.8 1.0
NE2 A:HIS128 4.8 6.5 1.0
CZ A:PHE214 4.9 6.9 1.0
CD2 A:HIS128 4.9 5.9 1.0
CD A:ARG411 4.9 6.6 1.0

Iron binding site 3 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 3 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe801

b:8.1
occ:0.70
 FE B:HDD801 0.0 8.1 0.7
FE B:HEM802 0.4 7.5 0.3
NA B:HEM802 1.8 7.2 0.3
ND B:HDD801 1.9 8.8 0.7
NC B:HEM802 2.0 7.6 0.3
O B:HOH1495 2.0 22.7 1.0
NB B:HEM802 2.0 7.9 0.3
OH B:TYR415 2.1 8.2 1.0
NA B:HDD801 2.1 8.0 0.7
NB B:HDD801 2.1 8.0 0.7
NC B:HDD801 2.1 8.1 0.7
ND B:HEM802 2.1 7.1 0.3
C4A B:HEM802 2.9 7.2 0.3
C1D B:HDD801 3.0 9.1 0.7
C4D B:HDD801 3.0 8.9 0.7
C1B B:HEM802 3.0 7.7 0.3
C1A B:HEM802 3.0 6.8 0.3
C4B B:HDD801 3.0 7.2 0.7
CZ B:TYR415 3.1 9.3 1.0
C1C B:HDD801 3.1 8.0 0.7
C4C B:HDD801 3.1 7.5 0.7
C4B B:HEM802 3.1 7.8 0.3
C4C B:HEM802 3.1 7.2 0.3
C1A B:HDD801 3.1 7.6 0.7
C4A B:HDD801 3.1 7.4 0.7
C1C B:HEM802 3.1 7.7 0.3
C1B B:HDD801 3.1 7.1 0.7
C4D B:HEM802 3.1 6.4 0.3
C1D B:HEM802 3.2 6.7 0.3
CHC B:HDD801 3.4 7.8 0.7
CHD B:HDD801 3.4 8.4 0.7
CHA B:HDD801 3.4 8.2 0.7
CHB B:HEM802 3.4 7.4 0.3
CHB B:HDD801 3.5 7.3 0.7
CHC B:HEM802 3.5 7.9 0.3
CHA B:HEM802 3.5 6.6 0.3
CHD B:HEM802 3.5 7.1 0.3
CE1 B:TYR415 3.7 8.2 1.0
CE2 B:TYR415 4.0 10.1 1.0
NE B:ARG411 4.3 6.6 1.0
C3A B:HEM802 4.3 6.9 0.3
C2A B:HEM802 4.3 6.7 0.3
C3C B:HDD801 4.3 7.5 0.7
NH2 B:ARG411 4.3 7.1 1.0
C2D B:HDD801 4.3 10.7 0.7
C2B B:HEM802 4.3 8.1 0.3
C3B B:HDD801 4.3 7.0 0.7
C3C B:HEM802 4.3 7.5 0.3
C3B B:HEM802 4.3 8.1 0.3
C2A B:HDD801 4.4 7.3 0.7
C2C B:HDD801 4.4 8.0 0.7
C2B B:HDD801 4.4 6.9 0.7
C3D B:HDD801 4.4 11.9 0.7
C2C B:HEM802 4.4 7.7 0.3
C3A B:HDD801 4.4 7.0 0.7
C3D B:HEM802 4.4 6.3 0.3
C2D B:HEM802 4.5 6.6 0.3
O B:HOH1216 4.5 20.7 1.0
CG2 B:VAL127 4.5 8.5 1.0
CZ B:PHE214 4.6 8.9 1.0
NE2 B:HIS128 4.6 7.2 1.0
CD2 B:HIS128 4.6 6.6 1.0
CZ B:ARG411 4.7 6.1 1.0
CD1 B:TYR415 5.0 9.5 1.0

Iron binding site 4 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 4 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:7.5
occ:0.30
 FE B:HEM802 0.0 7.5 0.3
FE B:HDD801 0.4 8.1 0.7
OH B:TYR415 1.7 8.2 1.0
ND B:HDD801 1.9 8.8 0.7
NA B:HEM802 2.0 7.2 0.3
NC B:HEM802 2.0 7.6 0.3
NC B:HDD801 2.1 8.1 0.7
NB B:HEM802 2.1 7.9 0.3
ND B:HEM802 2.1 7.1 0.3
NB B:HDD801 2.1 8.0 0.7
NA B:HDD801 2.2 8.0 0.7
O B:HOH1495 2.4 22.7 1.0
CZ B:TYR415 2.7 9.3 1.0
C1D B:HDD801 3.0 9.1 0.7
C4C B:HDD801 3.0 7.5 0.7
C4C B:HEM802 3.0 7.2 0.3
C4A B:HEM802 3.0 7.2 0.3
C1C B:HDD801 3.0 8.0 0.7
C4D B:HDD801 3.1 8.9 0.7
C4B B:HDD801 3.1 7.2 0.7
C1B B:HEM802 3.1 7.7 0.3
C1C B:HEM802 3.1 7.7 0.3
C4B B:HEM802 3.1 7.8 0.3
C1A B:HEM802 3.1 6.8 0.3
C1D B:HEM802 3.1 6.7 0.3
C4D B:HEM802 3.2 6.4 0.3
C1B B:HDD801 3.2 7.1 0.7
C4A B:HDD801 3.2 7.4 0.7
C1A B:HDD801 3.2 7.6 0.7
CHD B:HDD801 3.3 8.4 0.7
CHC B:HDD801 3.4 7.8 0.7
CE1 B:TYR415 3.4 8.2 1.0
CHD B:HEM802 3.5 7.1 0.3
CHB B:HEM802 3.5 7.4 0.3
CHA B:HDD801 3.5 8.2 0.7
CHC B:HEM802 3.5 7.9 0.3
CHB B:HDD801 3.5 7.3 0.7
CHA B:HEM802 3.6 6.6 0.3
CE2 B:TYR415 3.6 10.1 1.0
NE B:ARG411 4.0 6.6 1.0
NH2 B:ARG411 4.0 7.1 1.0
C3C B:HDD801 4.2 7.5 0.7
C3C B:HEM802 4.3 7.5 0.3
C2D B:HDD801 4.3 10.7 0.7
C3A B:HEM802 4.3 6.9 0.3
C3B B:HDD801 4.3 7.0 0.7
C2C B:HDD801 4.3 8.0 0.7
C2A B:HEM802 4.4 6.7 0.3
C2C B:HEM802 4.4 7.7 0.3
C3B B:HEM802 4.4 8.1 0.3
C2B B:HEM802 4.4 8.1 0.3
CZ B:ARG411 4.4 6.1 1.0
C3D B:HDD801 4.4 11.9 0.7
C2B B:HDD801 4.4 6.9 0.7
C2A B:HDD801 4.4 7.3 0.7
C2D B:HEM802 4.5 6.6 0.3
C3D B:HEM802 4.5 6.3 0.3
C3A B:HDD801 4.5 7.0 0.7
CD1 B:TYR415 4.7 9.5 1.0
O B:HOH1216 4.8 20.7 1.0
CG2 B:VAL127 4.8 8.5 1.0
CD2 B:TYR415 4.9 9.8 1.0
CZ B:PHE214 4.9 8.9 1.0
OND B:HDD801 5.0 10.9 0.7
CD B:ARG411 5.0 6.6 1.0
NE2 B:HIS128 5.0 7.2 1.0
CD2 B:HIS128 5.0 6.6 1.0

Iron binding site 5 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 5 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:7.9
occ:0.70
 FE C:HDD801 0.0 7.9 0.7
FE C:HEM802 0.4 7.0 0.3
NA C:HEM802 1.8 7.0 0.3
NC C:HEM802 1.9 7.0 0.3
ND C:HDD801 1.9 8.9 0.7
ND C:HEM802 2.0 6.7 0.3
NB C:HDD801 2.1 8.0 0.7
NA C:HDD801 2.1 7.6 0.7
NB C:HEM802 2.1 7.7 0.3
NC C:HDD801 2.1 8.1 0.7
OH C:TYR415 2.1 8.4 1.0
O C:HOH1502 2.4 29.6 1.0
C1A C:HEM802 2.9 6.7 0.3
C4A C:HEM802 3.0 7.1 0.3
C1D C:HDD801 3.0 9.7 0.7
C4D C:HDD801 3.0 9.3 0.7
C1A C:HDD801 3.0 7.5 0.7
C4A C:HDD801 3.0 7.5 0.7
C4C C:HEM802 3.0 6.7 0.3
C4D C:HEM802 3.1 6.3 0.3
C1C C:HEM802 3.1 7.0 0.3
C4B C:HDD801 3.1 7.4 0.7
C1B C:HDD801 3.1 7.3 0.7
CZ C:TYR415 3.1 9.6 1.0
C1B C:HEM802 3.1 7.8 0.3
C1D C:HEM802 3.1 6.4 0.3
C4C C:HDD801 3.1 8.0 0.7
C4B C:HEM802 3.1 7.8 0.3
C1C C:HDD801 3.1 7.6 0.7
CHA C:HDD801 3.4 8.2 0.7
CHA C:HEM802 3.4 6.5 0.3
CHD C:HDD801 3.5 8.4 0.7
CHB C:HDD801 3.5 7.1 0.7
CHC C:HDD801 3.5 7.8 0.7
CHB C:HEM802 3.5 7.3 0.3
CHD C:HEM802 3.5 6.5 0.3
CHC C:HEM802 3.6 7.5 0.3
CE1 C:TYR415 3.7 9.7 1.0
CE2 C:TYR415 4.1 10.0 1.0
NE C:ARG411 4.2 7.0 1.0
C2A C:HEM802 4.2 6.6 0.3
C3A C:HEM802 4.2 6.9 0.3
C3C C:HEM802 4.3 7.0 0.3
NH2 C:ARG411 4.3 6.1 1.0
C2A C:HDD801 4.3 7.1 0.7
C2C C:HEM802 4.3 7.0 0.3
C3A C:HDD801 4.3 7.2 0.7
C3B C:HDD801 4.3 7.0 0.7
C2D C:HDD801 4.3 10.9 0.7
C3D C:HEM802 4.3 6.0 0.3
C3D C:HDD801 4.4 11.3 0.7
C2B C:HDD801 4.4 7.1 0.7
C3C C:HDD801 4.4 8.8 0.7
C3B C:HEM802 4.4 8.3 0.3
C2D C:HEM802 4.4 6.2 0.3
C2B C:HEM802 4.4 8.3 0.3
O C:HOH1268 4.5 16.5 1.0
C2C C:HDD801 4.5 8.1 0.7
CG2 C:VAL127 4.5 10.2 1.0
NE2 C:HIS128 4.6 10.0 1.0
CZ C:ARG411 4.7 7.0 1.0
CD2 C:HIS128 4.7 8.2 1.0
CZ C:PHE214 4.7 7.9 1.0
CD1 C:TYR415 5.0 9.7 1.0

Iron binding site 6 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 6 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe802

b:7.0
occ:0.30
 FE C:HEM802 0.0 7.0 0.3
FE C:HDD801 0.4 7.9 0.7
OH C:TYR415 1.7 8.4 1.0
NC C:HEM802 2.0 7.0 0.3
NA C:HEM802 2.0 7.0 0.3
ND C:HDD801 2.0 8.9 0.7
NC C:HDD801 2.1 8.1 0.7
NB C:HDD801 2.1 8.0 0.7
NB C:HEM802 2.1 7.7 0.3
ND C:HEM802 2.1 6.7 0.3
NA C:HDD801 2.2 7.6 0.7
CZ C:TYR415 2.7 9.6 1.0
O C:HOH1502 2.8 29.6 1.0
C4C C:HEM802 3.0 6.7 0.3
C1D C:HDD801 3.0 9.7 0.7
C1C C:HEM802 3.0 7.0 0.3
C4B C:HDD801 3.1 7.4 0.7
C1A C:HEM802 3.1 6.7 0.3
C4C C:HDD801 3.1 8.0 0.7
C1C C:HDD801 3.1 7.6 0.7
C4A C:HEM802 3.1 7.1 0.3
C1B C:HDD801 3.1 7.3 0.7
C4D C:HDD801 3.1 9.3 0.7
C4B C:HEM802 3.1 7.8 0.3
C4A C:HDD801 3.1 7.5 0.7
C4D C:HEM802 3.1 6.3 0.3
C1D C:HEM802 3.1 6.4 0.3
C1B C:HEM802 3.2 7.8 0.3
C1A C:HDD801 3.2 7.5 0.7
CHD C:HDD801 3.4 8.4 0.7
CE1 C:TYR415 3.4 9.7 1.0
CHC C:HDD801 3.5 7.8 0.7
CHB C:HDD801 3.5 7.1 0.7
CHD C:HEM802 3.5 6.5 0.3
CHA C:HEM802 3.5 6.5 0.3
CHA C:HDD801 3.5 8.2 0.7
CHC C:HEM802 3.6 7.5 0.3
CHB C:HEM802 3.6 7.3 0.3
CE2 C:TYR415 3.7 10.0 1.0
NE C:ARG411 3.9 7.0 1.0
NH2 C:ARG411 4.0 6.1 1.0
C3C C:HEM802 4.2 7.0 0.3
C2C C:HEM802 4.2 7.0 0.3
C3B C:HDD801 4.3 7.0 0.7
CZ C:ARG411 4.3 7.0 1.0
C3C C:HDD801 4.3 8.8 0.7
C2D C:HDD801 4.3 10.9 0.7
C2A C:HEM802 4.3 6.6 0.3
C2B C:HDD801 4.4 7.1 0.7
C3A C:HEM802 4.4 6.9 0.3
C2C C:HDD801 4.4 8.1 0.7
C3D C:HDD801 4.4 11.3 0.7
C3B C:HEM802 4.4 8.3 0.3
C3A C:HDD801 4.4 7.2 0.7
C2A C:HDD801 4.4 7.1 0.7
C3D C:HEM802 4.4 6.0 0.3
C2D C:HEM802 4.5 6.2 0.3
C2B C:HEM802 4.5 8.3 0.3
CD1 C:TYR415 4.7 9.7 1.0
O C:HOH1268 4.8 16.5 1.0
CD C:ARG411 4.9 7.9 1.0
CG2 C:VAL127 4.9 10.2 1.0
CD2 C:TYR415 4.9 9.8 1.0
CZ C:PHE214 4.9 7.9 1.0
OND C:HDD801 5.0 12.5 0.7
NE2 C:HIS128 5.0 10.0 1.0
CG C:ARG411 5.0 8.8 1.0

Iron binding site 7 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 7 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe801

b:7.3
occ:0.70
 FE D:HDD801 0.0 7.3 0.7
FE D:HEM802 0.4 7.3 0.3
NA D:HEM802 1.9 7.0 0.3
NC D:HEM802 1.9 7.2 0.3
ND D:HEM802 1.9 6.5 0.3
ND D:HDD801 2.0 8.0 0.7
NA D:HDD801 2.0 7.4 0.7
NB D:HDD801 2.1 7.0 0.7
NC D:HDD801 2.1 7.4 0.7
OH D:TYR415 2.1 8.7 1.0
NB D:HEM802 2.2 7.7 0.3
O D:HOH1674 2.3 27.4 1.0
C1A D:HEM802 2.9 6.5 0.3
C4D D:HEM802 3.0 6.0 0.3
C4C D:HEM802 3.0 6.8 0.3
C1D D:HEM802 3.0 6.1 0.3
C1C D:HDD801 3.0 7.0 0.7
C4B D:HDD801 3.0 6.7 0.7
C4D D:HDD801 3.0 7.9 0.7
C1A D:HDD801 3.0 6.8 0.7
CZ D:TYR415 3.0 8.2 1.0
C1D D:HDD801 3.0 8.4 0.7
C4A D:HEM802 3.1 6.9 0.3
C4A D:HDD801 3.1 6.9 0.7
C1B D:HDD801 3.1 6.6 0.7
C4C D:HDD801 3.1 7.2 0.7
C1C D:HEM802 3.1 7.2 0.3
C1B D:HEM802 3.3 7.8 0.3
C4B D:HEM802 3.3 7.6 0.3
CHC D:HDD801 3.3 7.1 0.7
CHA D:HEM802 3.3 6.2 0.3
CHA D:HDD801 3.4 7.2 0.7
CHD D:HEM802 3.4 6.4 0.3
CHB D:HDD801 3.5 6.6 0.7
CHD D:HDD801 3.5 7.7 0.7
CHB D:HEM802 3.6 7.3 0.3
CHC D:HEM802 3.6 7.8 0.3
CE1 D:TYR415 3.8 7.2 1.0
CE2 D:TYR415 3.9 8.4 1.0
NE D:ARG411 4.2 6.8 1.0
C2A D:HEM802 4.2 6.4 0.3
C3D D:HEM802 4.3 5.7 0.3
C3A D:HEM802 4.3 6.8 0.3
C3C D:HEM802 4.3 6.7 0.3
NH2 D:ARG411 4.3 6.0 1.0
C2D D:HEM802 4.3 5.8 0.3
C3A D:HDD801 4.3 6.5 0.7
C3B D:HDD801 4.3 6.7 0.7
C2A D:HDD801 4.3 6.7 0.7
C3C D:HDD801 4.3 7.0 0.7
C2D D:HDD801 4.4 9.6 0.7
C2C D:HDD801 4.4 7.0 0.7
C2C D:HEM802 4.4 7.2 0.3
C2B D:HDD801 4.4 6.3 0.7
C3D D:HDD801 4.4 10.3 0.7
CG2 D:VAL127 4.5 7.8 1.0
C3B D:HEM802 4.6 8.3 0.3
C2B D:HEM802 4.6 8.1 0.3
O D:HOH1052 4.6 16.7 1.0
CZ D:PHE214 4.6 7.5 1.0
CZ D:ARG411 4.6 5.7 1.0
NE2 D:HIS128 4.7 8.2 1.0
CD2 D:HIS128 4.8 6.4 1.0

Iron binding site 8 out of 8 in 4ens

Go back to Iron Binding Sites List in 4ens
Iron binding site 8 out of 8 in the Structure of E530Q Variant of E. Coli Kate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of E530Q Variant of E. Coli Kate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe802

b:7.3
occ:0.30
 FE D:HEM802 0.0 7.3 0.3
FE D:HDD801 0.4 7.3 0.7
OH D:TYR415 1.8 8.7 1.0
NB D:HDD801 1.9 7.0 0.7
NA D:HEM802 1.9 7.0 0.3
NC D:HEM802 2.0 7.2 0.3
NC D:HDD801 2.0 7.4 0.7
NB D:HEM802 2.1 7.7 0.3
ND D:HEM802 2.1 6.5 0.3
NA D:HDD801 2.1 7.4 0.7
ND D:HDD801 2.1 8.0 0.7
O D:HOH1674 2.6 27.4 1.0
CZ D:TYR415 2.8 8.2 1.0
C4B D:HDD801 2.9 6.7 0.7
C1C D:HDD801 3.0 7.0 0.7
C1B D:HDD801 3.0 6.6 0.7
C4C D:HEM802 3.0 6.8 0.3
C4A D:HEM802 3.1 6.9 0.3
C1A D:HEM802 3.1 6.5 0.3
C1C D:HEM802 3.1 7.2 0.3
C4A D:HDD801 3.1 6.9 0.7
C1B D:HEM802 3.1 7.8 0.3
C1D D:HEM802 3.1 6.1 0.3
C4D D:HEM802 3.1 6.0 0.3
C4B D:HEM802 3.1 7.6 0.3
C4C D:HDD801 3.1 7.2 0.7
C1A D:HDD801 3.2 6.8 0.7
CHC D:HDD801 3.2 7.1 0.7
C1D D:HDD801 3.2 8.4 0.7
C4D D:HDD801 3.2 7.9 0.7
CHB D:HDD801 3.4 6.6 0.7
CHA D:HEM802 3.5 6.2 0.3
CHD D:HEM802 3.5 6.4 0.3
CHB D:HEM802 3.5 7.3 0.3
CHA D:HDD801 3.5 7.2 0.7
CHC D:HEM802 3.6 7.8 0.3
CHD D:HDD801 3.6 7.7 0.7
CE1 D:TYR415 3.6 7.2 1.0
CE2 D:TYR415 3.6 8.4 1.0
NE D:ARG411 3.8 6.8 1.0
NH2 D:ARG411 3.9 6.0 1.0
C3B D:HDD801 4.2 6.7 0.7
C3C D:HEM802 4.2 6.7 0.3
C2B D:HDD801 4.3 6.3 0.7
CZ D:ARG411 4.3 5.7 1.0
C3A D:HEM802 4.3 6.8 0.3
C2A D:HEM802 4.3 6.4 0.3
C2C D:HEM802 4.3 7.2 0.3
C2C D:HDD801 4.3 7.0 0.7
C3C D:HDD801 4.3 7.0 0.7
C3A D:HDD801 4.4 6.5 0.7
C2A D:HDD801 4.4 6.7 0.7
C3B D:HEM802 4.4 8.3 0.3
C3D D:HEM802 4.4 5.7 0.3
C2D D:HEM802 4.4 5.8 0.3
C2B D:HEM802 4.5 8.1 0.3
C2D D:HDD801 4.5 9.6 0.7
C3D D:HDD801 4.6 10.3 0.7
O D:HOH1052 4.8 16.7 1.0
CG2 D:VAL127 4.8 7.8 1.0
CZ D:PHE214 4.8 7.5 1.0
CD1 D:TYR415 4.9 7.7 1.0
CD D:ARG411 4.9 6.8 1.0
CD2 D:TYR415 4.9 8.6 1.0
NE2 D:HIS128 4.9 8.2 1.0

Reference:

V.Jha, P.Chelikani, X.Carpena, I.Fita, P.C.Loewen. Influence of Main Channel Structure on H(2)O(2) Access to the Heme Cavity of Catalase Kate of Escherichia Coli. Arch.Biochem.Biophys. V. 526 54 2012.
ISSN: ISSN 0003-9861
PubMed: 22820098
DOI: 10.1016/J.ABB.2012.06.010
Page generated: Mon Aug 5 01:43:58 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy