Atomistry » Iron » PDB 4f2z-4fh6 » 4fa4
Atomistry »
  Iron »
    PDB 4f2z-4fh6 »
      4fa4 »

Iron in PDB 4fa4: Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days

Enzymatic activity of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days

All present enzymatic activity of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days:
1.4.9.1; 1.4.99.3;

Protein crystallography data

The structure of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days, PDB code: 4fa4 was solved by E.T.Yukl, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.46 / 2.14
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 55.530, 83.520, 107.780, 109.92, 91.52, 105.78
R / Rfree (%) 16.3 / 22.7

Other elements in 4fa4:

The structure of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days (pdb code 4fa4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days, PDB code: 4fa4:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 4fa4

Go back to Iron Binding Sites List in 4fa4
Iron binding site 1 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:35.0
occ:1.00
FE A:HEC402 0.0 35.0 1.0
NE2 A:HIS35 1.9 33.5 1.0
NA A:HEC402 2.1 38.1 1.0
NC A:HEC402 2.1 36.7 1.0
ND A:HEC402 2.1 37.4 1.0
NB A:HEC402 2.1 35.2 1.0
O A:HOH649 2.2 12.5 0.5
CE1 A:HIS35 2.9 33.3 1.0
CD2 A:HIS35 3.0 32.5 1.0
C1D A:HEC402 3.1 37.2 1.0
C4A A:HEC402 3.1 33.9 1.0
C4D A:HEC402 3.1 37.1 1.0
C4C A:HEC402 3.1 38.0 1.0
C1A A:HEC402 3.1 37.5 1.0
C1B A:HEC402 3.1 36.6 1.0
C1C A:HEC402 3.1 36.0 1.0
C4B A:HEC402 3.1 34.7 1.0
CHD A:HEC402 3.4 37.8 1.0
CHB A:HEC402 3.4 32.4 1.0
CHA A:HEC402 3.4 38.6 1.0
CHC A:HEC402 3.5 33.8 1.0
O A:HOH649 4.0 12.2 0.5
ND1 A:HIS35 4.0 32.9 1.0
CG A:HIS35 4.1 31.6 1.0
NE2 A:GLN103 4.2 36.7 1.0
C3D A:HEC402 4.4 35.8 1.0
C3A A:HEC402 4.4 33.2 1.0
C2D A:HEC402 4.4 36.0 1.0
C2C A:HEC402 4.4 36.8 1.0
C3C A:HEC402 4.4 36.8 1.0
C2A A:HEC402 4.4 37.2 1.0
C2B A:HEC402 4.4 34.2 1.0
C3B A:HEC402 4.4 32.4 1.0
CG A:PRO107 4.4 38.2 1.0
CB A:PRO107 4.8 38.5 1.0
CD2 A:LEU70 5.0 32.7 1.0

Iron binding site 2 out of 4 in 4fa4

Go back to Iron Binding Sites List in 4fa4
Iron binding site 2 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe403

b:31.8
occ:1.00
FE A:HEC403 0.0 31.8 1.0
OH A:TYR294 1.9 32.2 1.0
NE2 A:HIS205 2.0 27.8 1.0
NC A:HEC403 2.1 30.7 1.0
NB A:HEC403 2.1 31.1 1.0
ND A:HEC403 2.1 29.8 1.0
NA A:HEC403 2.1 30.3 1.0
CZ A:TYR294 2.8 31.7 1.0
CE1 A:HIS205 3.0 26.9 1.0
C1D A:HEC403 3.0 34.2 1.0
C4C A:HEC403 3.0 32.0 1.0
C1B A:HEC403 3.0 35.7 1.0
CD2 A:HIS205 3.0 24.8 1.0
C4D A:HEC403 3.1 30.4 1.0
C4A A:HEC403 3.1 32.5 1.0
C4B A:HEC403 3.1 30.5 1.0
C1C A:HEC403 3.1 27.3 1.0
C1A A:HEC403 3.1 29.3 1.0
CHD A:HEC403 3.3 29.0 1.0
CHB A:HEC403 3.4 31.2 1.0
CHC A:HEC403 3.5 30.0 1.0
CE1 A:TYR294 3.5 32.9 1.0
CHA A:HEC403 3.5 27.1 1.0
CE2 A:TYR294 3.7 30.6 1.0
ND1 A:HIS205 4.1 29.9 1.0
CG A:HIS205 4.2 29.3 1.0
C3D A:HEC403 4.3 31.9 1.0
C2D A:HEC403 4.3 29.9 1.0
C3C A:HEC403 4.4 29.5 1.0
C2B A:HEC403 4.4 33.8 1.0
C2C A:HEC403 4.4 30.4 1.0
C3B A:HEC403 4.4 33.9 1.0
C3A A:HEC403 4.4 33.8 1.0
C2A A:HEC403 4.4 34.2 1.0
CD1 A:TYR294 4.7 33.4 1.0
CD2 A:TYR294 4.9 32.4 1.0

Iron binding site 3 out of 4 in 4fa4

Go back to Iron Binding Sites List in 4fa4
Iron binding site 3 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe402

b:29.7
occ:1.00
FE B:HEC402 0.0 29.7 1.0
NE2 B:HIS35 1.9 22.3 1.0
O B:HOH599 2.0 12.4 0.5
NA B:HEC402 2.1 28.9 1.0
NB B:HEC402 2.1 29.6 1.0
NC B:HEC402 2.1 27.7 1.0
ND B:HEC402 2.1 28.3 1.0
CE1 B:HIS35 2.9 25.4 1.0
CD2 B:HIS35 3.0 26.8 1.0
C1B B:HEC402 3.1 30.1 1.0
C4A B:HEC402 3.1 28.5 1.0
C1D B:HEC402 3.1 27.5 1.0
C4B B:HEC402 3.1 29.4 1.0
C1C B:HEC402 3.1 28.6 1.0
C4D B:HEC402 3.1 25.9 1.0
C1A B:HEC402 3.1 27.7 1.0
C4C B:HEC402 3.1 31.1 1.0
CHB B:HEC402 3.4 25.5 1.0
CHA B:HEC402 3.4 25.2 1.0
CHD B:HEC402 3.4 28.6 1.0
CHC B:HEC402 3.5 28.1 1.0
O B:HOH599 3.7 19.1 0.5
NE2 B:GLN103 3.9 27.6 1.0
ND1 B:HIS35 4.0 24.8 1.0
CG B:HIS35 4.1 25.9 1.0
CG B:PRO107 4.3 31.8 1.0
C2D B:HEC402 4.3 26.6 1.0
C2B B:HEC402 4.4 29.8 1.0
C3B B:HEC402 4.4 29.6 1.0
C3A B:HEC402 4.4 25.8 1.0
C3D B:HEC402 4.4 25.6 1.0
C2C B:HEC402 4.4 29.1 1.0
C2A B:HEC402 4.4 26.5 1.0
C3C B:HEC402 4.4 28.2 1.0
CB B:PRO107 4.8 30.8 1.0
CD B:GLN103 4.9 30.8 1.0

Iron binding site 4 out of 4 in 4fa4

Go back to Iron Binding Sites List in 4fa4
Iron binding site 4 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe403

b:23.4
occ:1.00
FE B:HEC403 0.0 23.4 1.0
ND B:HEC403 2.0 17.4 1.0
OH B:TYR294 2.0 27.8 1.0
NC B:HEC403 2.0 17.2 1.0
NA B:HEC403 2.0 18.6 1.0
NB B:HEC403 2.1 21.8 1.0
NE2 B:HIS205 2.1 25.3 1.0
CD2 B:HIS205 2.9 22.8 1.0
CZ B:TYR294 2.9 26.4 1.0
C4D B:HEC403 3.0 16.9 1.0
C1D B:HEC403 3.0 18.2 1.0
C4A B:HEC403 3.0 21.5 1.0
C4C B:HEC403 3.0 24.2 1.0
C1C B:HEC403 3.0 18.3 1.0
C1B B:HEC403 3.1 25.6 1.0
C1A B:HEC403 3.1 19.0 1.0
C4B B:HEC403 3.1 18.4 1.0
CE1 B:HIS205 3.2 23.9 1.0
CHB B:HEC403 3.4 23.1 1.0
CHD B:HEC403 3.4 18.9 1.0
CHA B:HEC403 3.4 18.1 1.0
CHC B:HEC403 3.5 20.3 1.0
CE1 B:TYR294 3.6 25.6 1.0
CE2 B:TYR294 3.8 26.7 1.0
CG B:HIS205 4.1 26.8 1.0
ND1 B:HIS205 4.2 28.8 1.0
C3D B:HEC403 4.3 19.7 1.0
C2D B:HEC403 4.3 16.2 1.0
C2C B:HEC403 4.3 23.1 1.0
C3C B:HEC403 4.3 23.8 1.0
C3B B:HEC403 4.4 21.2 1.0
C3A B:HEC403 4.4 18.5 1.0
C2B B:HEC403 4.4 25.2 1.0
C2A B:HEC403 4.4 22.1 1.0
CD1 B:TYR294 4.8 20.6 1.0
CD2 B:TYR294 5.0 22.6 1.0

Reference:

E.T.Yukl, F.Liu, J.Krzystek, S.Shin, L.M.Jensen, V.L.Davidson, C.M.Wilmot, A.Liu. Diradical Intermediate Within the Context of Tryptophan Tryptophylquinone Biosynthesis. Proc.Natl.Acad.Sci.Usa V. 110 4569 2013.
ISSN: ISSN 0027-8424
PubMed: 23487750
DOI: 10.1073/PNAS.1215011110
Page generated: Tue Aug 5 10:18:01 2025

Last articles

Fe in 5OBA
Fe in 5O31
Fe in 5OD5
Fe in 5OCF
Fe in 5OBP
Fe in 5OCB
Fe in 5OC0
Fe in 5OBI
Fe in 5OBO
Fe in 5OAY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy