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Iron in PDB 4mk4: S197C Variant of Human Ferrochelatase.

Enzymatic activity of S197C Variant of Human Ferrochelatase.

All present enzymatic activity of S197C Variant of Human Ferrochelatase.:
4.99.1.1;

Protein crystallography data

The structure of S197C Variant of Human Ferrochelatase., PDB code: 4mk4 was solved by W.N.Lanzilotta, A.E.Medlock, T.E.Dailey, H.A.Dailey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 88.173, 93.431, 111.737, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 27.7

Iron Binding Sites:

The binding sites of Iron atom in the S197C Variant of Human Ferrochelatase. (pdb code 4mk4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the S197C Variant of Human Ferrochelatase., PDB code: 4mk4:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 4mk4

Go back to Iron Binding Sites List in 4mk4
Iron binding site 1 out of 4 in the S197C Variant of Human Ferrochelatase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of S197C Variant of Human Ferrochelatase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:43.4
occ:1.00
FE1 A:FES501 0.0 43.4 1.0
S2 A:FES501 2.2 41.3 1.0
S1 A:FES501 2.2 36.9 1.0
SG A:CYS411 2.3 40.4 1.0
SG A:CYS406 2.3 40.1 1.0
FE2 A:FES501 3.0 39.8 1.0
CB A:CYS411 3.2 41.6 1.0
CB A:CYS406 3.6 40.9 1.0
O A:HOH616 3.9 42.7 1.0
CA A:CYS406 4.3 41.1 1.0
SG A:CYS403 4.5 38.4 1.0
CB A:ASN408 4.5 44.3 1.0
O A:ASN408 4.6 43.8 1.0
CA A:CYS411 4.6 41.9 1.0
SG A:CYS196 4.7 33.5 1.0
N A:CYS403 4.9 37.6 1.0
N A:ASN408 5.0 44.2 1.0

Iron binding site 2 out of 4 in 4mk4

Go back to Iron Binding Sites List in 4mk4
Iron binding site 2 out of 4 in the S197C Variant of Human Ferrochelatase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of S197C Variant of Human Ferrochelatase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:39.8
occ:1.00
FE2 A:FES501 0.0 39.8 1.0
S1 A:FES501 2.2 36.9 1.0
S2 A:FES501 2.2 41.3 1.0
SG A:CYS196 2.3 33.5 1.0
SG A:CYS403 2.3 38.4 1.0
FE1 A:FES501 3.0 43.4 1.0
CB A:CYS196 3.3 28.0 1.0
O A:HOH644 3.6 42.2 1.0
CB A:CYS403 3.9 39.9 1.0
N A:CYS403 4.0 37.6 1.0
CA A:CYS403 4.4 39.3 1.0
SG A:CYS411 4.6 40.4 1.0
CA A:CYS196 4.7 27.6 1.0
SG A:CYS406 4.7 40.1 1.0
OD1 A:ASP274 4.9 30.5 1.0

Iron binding site 3 out of 4 in 4mk4

Go back to Iron Binding Sites List in 4mk4
Iron binding site 3 out of 4 in the S197C Variant of Human Ferrochelatase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of S197C Variant of Human Ferrochelatase. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:45.3
occ:1.00
FE1 B:FES501 0.0 45.3 1.0
S2 B:FES501 2.2 45.2 1.0
S1 B:FES501 2.2 43.4 1.0
SG B:CYS406 2.3 46.8 1.0
SG B:CYS411 2.3 40.2 1.0
FE2 B:FES501 3.0 46.5 1.0
CB B:CYS411 3.2 41.5 1.0
CB B:CYS406 3.6 44.8 1.0
CA B:CYS406 4.3 44.3 1.0
CB B:ASN408 4.4 44.8 1.0
CB B:CYS403 4.5 39.3 1.0
O B:ASN408 4.6 44.7 1.0
CA B:CYS411 4.6 41.7 1.0
SG B:CYS196 4.7 32.6 1.0
N B:CYS403 4.8 37.5 1.0
SG B:CYS403 4.9 41.4 1.0
N B:ASN408 4.9 45.2 1.0
NH1 B:ARG272 5.0 45.1 1.0
CB B:CYS196 5.0 29.2 1.0

Iron binding site 4 out of 4 in 4mk4

Go back to Iron Binding Sites List in 4mk4
Iron binding site 4 out of 4 in the S197C Variant of Human Ferrochelatase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of S197C Variant of Human Ferrochelatase. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:46.5
occ:1.00
FE2 B:FES501 0.0 46.5 1.0
S1 B:FES501 2.2 43.4 1.0
S2 B:FES501 2.2 45.2 1.0
SG B:CYS403 2.3 41.4 1.0
SG B:CYS196 2.3 32.6 1.0
FE1 B:FES501 3.0 45.3 1.0
CB B:CYS403 3.0 39.3 1.0
CB B:CYS196 3.4 29.2 1.0
N B:CYS403 3.9 37.5 1.0
NH1 B:ARG272 3.9 45.1 1.0
CA B:CYS403 4.0 39.0 1.0
SG B:CYS406 4.7 46.8 1.0
SG B:CYS411 4.7 40.2 1.0
OD1 B:ASP274 4.7 27.6 1.0
CA B:CYS196 4.8 28.8 1.0

Reference:

W.N.Lanzilotta, A.E.Medlock, T.E.Dailey, H.A.Dailey. S197C Variant of Human Ferrochelatase. To Be Published.
Page generated: Mon Aug 5 06:55:38 2024

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