Atomistry » Iron » PDB 4m71-4n0k » 4ml5
Atomistry »
  Iron »
    PDB 4m71-4n0k »
      4ml5 »

Iron in PDB 4ml5: One Minute Iron Loaded Frog M Ferritin Mutant H54Q

Enzymatic activity of One Minute Iron Loaded Frog M Ferritin Mutant H54Q

All present enzymatic activity of One Minute Iron Loaded Frog M Ferritin Mutant H54Q:
1.16.3.1;

Protein crystallography data

The structure of One Minute Iron Loaded Frog M Ferritin Mutant H54Q, PDB code: 4ml5 was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.71 / 1.22
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.230, 184.230, 184.230, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 15.4

Other elements in 4ml5:

The structure of One Minute Iron Loaded Frog M Ferritin Mutant H54Q also contains other interesting chemical elements:

Magnesium (Mg) 9 atoms
Chlorine (Cl) 16 atoms

Iron Binding Sites:

The binding sites of Iron atom in the One Minute Iron Loaded Frog M Ferritin Mutant H54Q (pdb code 4ml5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the One Minute Iron Loaded Frog M Ferritin Mutant H54Q, PDB code: 4ml5:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 4ml5

Go back to Iron Binding Sites List in 4ml5
Iron binding site 1 out of 4 in the One Minute Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of One Minute Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:8.8
occ:0.70
OE1 A:GLU23 2.0 7.9 1.0
OE1 A:GLU58 2.1 9.8 1.0
O A:HOH663 2.1 9.7 1.0
O A:HOH673 2.1 8.6 1.0
ND1 A:HIS61 2.2 9.7 1.0
CD A:GLU23 3.0 7.4 1.0
CD A:GLU58 3.0 9.2 1.0
CE1 A:HIS61 3.1 10.0 1.0
CG A:HIS61 3.2 9.4 1.0
OE2 A:GLU23 3.3 8.1 1.0
OE2 A:GLU58 3.4 10.1 1.0
CB A:HIS61 3.6 8.5 1.0
CG1 A:VAL106 3.9 6.5 1.0
NE2 A:HIS61 4.2 10.5 1.0
OE1 A:GLN137 4.2 7.7 1.0
O A:HOH360 4.2 9.3 1.0
CD2 A:HIS61 4.3 9.8 1.0
CG A:GLU23 4.3 6.8 1.0
CG A:GLU58 4.3 8.4 1.0
CA A:GLU58 4.4 7.9 1.0
CB A:GLU58 4.6 8.0 1.0
CB A:GLU23 4.6 6.1 1.0
O A:HOH649 4.7 13.6 1.0
CA A:GLU23 4.9 5.9 1.0
O A:GLU58 4.9 7.6 1.0
CG2 A:VAL106 4.9 6.5 1.0
CD A:GLN137 4.9 7.2 1.0
CB A:VAL106 5.0 6.4 1.0

Iron binding site 2 out of 4 in 4ml5

Go back to Iron Binding Sites List in 4ml5
Iron binding site 2 out of 4 in the One Minute Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of One Minute Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:20.0
occ:0.20
OD1 A:ASP140 2.3 10.8 0.4
OE2 A:GLU136 2.5 11.1 0.7
O A:HOH669 2.6 12.2 1.0
O A:HOH484 2.6 22.7 1.0
OE2 A:GLU57 2.6 12.4 0.3
CG A:ASP140 2.9 9.3 0.4
OD2 A:ASP140 3.2 10.8 0.4
NH1 A:ARG143 3.3 12.8 1.0
O A:HOH388 3.3 15.4 1.0
OD1 A:ASP140 3.4 8.3 0.6
CD A:GLU136 3.4 10.6 0.7
CG A:ASP140 3.5 7.7 0.6
OE1 A:GLU136 3.5 11.5 0.7
CD A:GLU57 3.6 11.1 0.3
OD2 A:ASP140 3.9 8.5 0.6
OE1 A:GLU57 3.9 11.8 0.7
O A:HOH437 4.0 17.3 1.0
CB A:ASP140 4.0 7.6 0.6
OE1 A:GLU57 4.1 12.2 0.3
O A:HOH637 4.1 36.9 1.0
OE1 A:GLN54 4.2 11.6 0.5
CB A:ASP140 4.2 8.3 0.4
CZ A:ARG143 4.2 12.4 1.0
FE A:FE2204 4.2 5.8 0.3
FE A:FE2203 4.4 10.2 0.2
CD A:GLU57 4.4 10.6 0.7
OE2 A:GLU57 4.5 11.2 0.7
O A:HOH649 4.5 13.6 1.0
CG A:GLU57 4.8 10.5 0.3
O A:HOH425 4.8 20.9 1.0
NE A:ARG143 4.8 11.5 1.0
CA A:ASP140 4.8 7.2 0.5
CG A:GLU136 4.8 10.5 1.0
CA A:ASP140 4.9 7.4 0.5
NE2 A:GLN54 4.9 8.3 0.5

Iron binding site 3 out of 4 in 4ml5

Go back to Iron Binding Sites List in 4ml5
Iron binding site 3 out of 4 in the One Minute Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of One Minute Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:10.2
occ:0.20
OE2 A:GLU57 2.0 11.2 0.7
O A:HOH437 2.0 17.3 1.0
OE2 A:GLU53 2.1 10.9 0.5
O A:HOH546 2.1 20.7 1.0
O A:HOH489 2.2 22.1 1.0
O A:HOH484 2.2 22.7 1.0
CD A:GLU57 3.0 10.6 0.7
OE1 A:GLU57 3.2 12.2 0.3
CD A:GLU53 3.2 10.0 0.5
OE1 A:GLU57 3.4 11.8 0.7
CG A:GLU53 3.5 10.4 0.5
OE2 A:GLU53 3.6 16.9 0.5
CG A:GLU53 3.7 9.2 0.5
CD A:GLU53 4.0 10.1 0.5
O A:HOH532 4.0 21.1 1.0
CD A:GLU57 4.1 11.1 0.3
O A:HOH678 4.2 16.6 1.0
NH1 A:ARG143 4.2 12.8 1.0
O A:HOH637 4.3 36.9 1.0
OE1 A:GLU53 4.3 11.2 0.5
OE2 A:GLU57 4.3 12.4 0.3
CG A:GLU57 4.3 9.9 0.7
FE A:FE2202 4.4 20.0 0.2
O A:HOH454 4.5 18.0 1.0
NH2 A:ARG143 4.5 13.3 1.0
OE1 A:GLN54 4.6 11.6 0.5
CZ A:ARG143 4.8 12.4 1.0
CB A:GLU53 4.9 9.3 0.5
CB A:GLU53 4.9 8.7 0.5

Iron binding site 4 out of 4 in 4ml5

Go back to Iron Binding Sites List in 4ml5
Iron binding site 4 out of 4 in the One Minute Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of One Minute Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe204

b:5.8
occ:0.30
OD2 A:ASP140 2.0 8.5 0.6
OE1 A:GLN54 2.1 7.1 0.5
O A:HOH589 2.1 10.8 1.0
O A:HOH669 2.1 12.2 1.0
OE2 A:GLU103 2.2 9.4 1.0
O A:HOH649 2.3 13.6 1.0
NE2 A:GLN54 2.6 11.2 0.5
OD2 A:ASP140 2.9 10.8 0.4
CG A:ASP140 3.1 7.7 0.6
CD A:GLN54 3.1 7.8 0.5
CD A:GLU103 3.2 8.5 1.0
CD A:GLN54 3.2 10.2 0.5
OE1 A:GLN54 3.4 11.6 0.5
NE2 A:GLN54 3.5 8.3 0.5
OE1 A:GLU103 3.5 9.2 1.0
CG A:ASP140 3.6 9.3 0.4
CB A:ASP140 3.9 7.6 0.6
OE2 A:GLU58 3.9 10.1 1.0
OD1 A:ASP140 3.9 8.3 0.6
CB A:ASP140 4.0 8.3 0.4
OH A:TYR30 4.1 8.9 1.0
OE2 A:GLU136 4.1 11.1 0.7
FE A:FE2202 4.2 20.0 0.2
CE2 A:TYR30 4.3 6.9 1.0
OE1 A:GLU57 4.4 11.8 0.7
CG A:GLN54 4.4 8.1 0.5
CG A:GLU103 4.4 7.9 1.0
OD1 A:ASP140 4.5 10.8 0.4
CG A:GLN54 4.5 9.5 0.5
CZ A:TYR30 4.5 7.3 1.0
OE2 A:GLU57 4.6 12.4 0.3
CB A:GLN54 4.7 7.7 0.5
CB A:GLN54 4.7 8.5 0.5
O A:HOH663 4.9 9.7 1.0
CD A:GLU57 4.9 11.1 0.3
CD A:GLU58 4.9 9.2 1.0
CG A:GLU57 4.9 10.5 0.3
CA A:GLN54 4.9 7.8 0.5
CA A:GLN54 4.9 8.0 0.5

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Mon Aug 5 06:55:55 2024

Last articles

Cl in 4PXY
Cl in 4PYT
Cl in 4PYQ
Cl in 4PYN
Cl in 4PYK
Cl in 4PYJ
Cl in 4PXS
Cl in 4PX8
Cl in 4PX5
Cl in 4PX3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy