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Iron in PDB 4mu8: Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8

Protein crystallography data

The structure of Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8, PDB code: 4mu8 was solved by L.J.Mcclelland, T.-C.Mou, M.E.Jeakins-Cooley, S.R.Sprang, B.E.Bowler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.45
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.621, 93.621, 155.014, 90.00, 90.00, 120.00
R / Rfree (%) 14.5 / 15.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8 (pdb code 4mu8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8, PDB code: 4mu8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4mu8

Go back to Iron Binding Sites List in 4mu8
Iron binding site 1 out of 2 in the Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:9.6
occ:1.00
FE A:HEM201 0.0 9.6 1.0
O A:HOH303 2.0 12.5 1.0
NE2 A:HIS18 2.0 9.1 1.0
NA A:HEM201 2.1 9.1 1.0
ND A:HEM201 2.1 9.8 1.0
NC A:HEM201 2.1 8.9 1.0
NB A:HEM201 2.2 11.2 1.0
CE1 A:HIS18 3.0 9.8 1.0
C1A A:HEM201 3.0 9.5 1.0
C1D A:HEM201 3.0 8.7 1.0
C4C A:HEM201 3.0 9.0 1.0
C4A A:HEM201 3.1 9.5 1.0
C4D A:HEM201 3.1 9.1 1.0
CD2 A:HIS18 3.1 9.4 1.0
C1C A:HEM201 3.1 9.1 1.0
C4B A:HEM201 3.1 10.3 1.0
C1B A:HEM201 3.1 9.9 1.0
HE1 A:HIS18 3.1 11.7 1.0
HD2 A:HIS18 3.3 11.3 1.0
CHD A:HEM201 3.4 9.1 1.0
CHA A:HEM201 3.4 9.7 1.0
CHB A:HEM201 3.5 10.1 1.0
CHC A:HEM201 3.5 10.4 1.0
HH A:TYR67 3.7 15.8 1.0
O A:HOH301 4.0 10.6 0.2
O A:HOH301 4.1 11.5 0.8
ND1 A:HIS18 4.1 9.5 1.0
CG A:HIS18 4.2 10.0 1.0
C2A A:HEM201 4.2 10.8 1.0
C3A A:HEM201 4.2 9.9 1.0
C3C A:HEM201 4.2 9.1 1.0
C2D A:HEM201 4.2 8.4 1.0
C3D A:HEM201 4.3 8.9 1.0
C2C A:HEM201 4.3 10.0 1.0
C2B A:HEM201 4.3 9.8 1.0
C3B A:HEM201 4.3 9.9 1.0
HE2 A:TYR67 4.4 15.4 1.0
OH A:TYR67 4.4 13.2 1.0
HA3 A:GLY29 4.8 12.6 1.0
HD11 A:LEU32 4.8 15.4 1.0
HD2 A:PRO30 4.8 11.4 1.0
HB2 A:CYS17 4.8 12.2 1.0
HD21 A:LEU32 4.8 15.0 1.0
HD1 A:HIS18 4.9 11.4 1.0
HD1 A:PHE82 5.0 18.1 1.0

Iron binding site 2 out of 2 in 4mu8

Go back to Iron Binding Sites List in 4mu8
Iron binding site 2 out of 2 in the Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of An Oxidized Form of Yeast Iso-1-Cytochrome C at pH 8.8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:10.1
occ:1.00
FE B:HEM202 0.0 10.1 1.0
O B:HOH305 2.0 12.6 1.0
NE2 B:HIS18 2.0 10.1 1.0
NA B:HEM202 2.0 8.8 1.0
ND B:HEM202 2.1 10.2 1.0
NC B:HEM202 2.1 8.7 1.0
NB B:HEM202 2.2 10.5 1.0
CE1 B:HIS18 3.0 9.1 1.0
C1A B:HEM202 3.0 10.4 1.0
CD2 B:HIS18 3.0 10.0 1.0
C4D B:HEM202 3.1 9.2 1.0
C4C B:HEM202 3.1 9.1 1.0
C1D B:HEM202 3.1 8.7 1.0
C4A B:HEM202 3.1 9.3 1.0
C1C B:HEM202 3.1 10.1 1.0
C4B B:HEM202 3.1 9.6 1.0
C1B B:HEM202 3.1 9.7 1.0
HE1 B:HIS18 3.2 10.9 1.0
HD2 B:HIS18 3.3 12.0 1.0
CHD B:HEM202 3.4 9.7 1.0
CHA B:HEM202 3.4 11.1 1.0
CHB B:HEM202 3.5 10.9 1.0
CHC B:HEM202 3.5 10.1 1.0
HH B:TYR67 3.7 14.8 1.0
O B:HOH303 4.0 12.1 0.4
O B:HOH303 4.1 10.1 0.6
ND1 B:HIS18 4.1 9.9 1.0
CG B:HIS18 4.2 9.5 1.0
C3A B:HEM202 4.2 9.7 1.0
C2A B:HEM202 4.2 11.7 1.0
C3C B:HEM202 4.2 9.8 1.0
C2D B:HEM202 4.3 8.8 1.0
C2C B:HEM202 4.3 9.8 1.0
C3D B:HEM202 4.3 10.0 1.0
C2B B:HEM202 4.3 9.8 1.0
C3B B:HEM202 4.3 10.1 1.0
HE2 B:TYR67 4.4 13.6 1.0
OH B:TYR67 4.4 12.4 1.0
HA3 B:GLY29 4.7 13.9 1.0
HD2 B:PRO30 4.8 13.8 1.0
HD11 B:LEU32 4.8 14.9 1.0
HB2 B:CYS17 4.8 13.2 1.0
HD1 B:HIS18 4.9 11.9 1.0
HD1 B:PHE82 4.9 18.9 1.0
HD21 B:LEU32 4.9 16.4 1.0

Reference:

L.J.Mcclelland, T.C.Mou, M.E.Jeakins-Cooley, S.R.Sprang, B.E.Bowler. Structure of A Mitochondrial Cytochrome C Conformer Competent For Peroxidase Activity. Proc.Natl.Acad.Sci.Usa V. 111 6648 2014.
ISSN: ISSN 0027-8424
PubMed: 24760830
DOI: 10.1073/PNAS.1323828111
Page generated: Mon Aug 5 07:01:44 2024

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