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Iron in PDB 4n4y: Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus

Enzymatic activity of Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus

All present enzymatic activity of Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus:
1.9.3.1;

Protein crystallography data

The structure of Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus, PDB code: 4n4y was solved by Y.Li, Y.Chen, C.D.Stout, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.96 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 144.150, 98.400, 114.100, 90.00, 138.93, 90.00
R / Rfree (%) 17.7 / 22.5

Other elements in 4n4y:

The structure of Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus (pdb code 4n4y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus, PDB code: 4n4y:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4n4y

Go back to Iron Binding Sites List in 4n4y
Iron binding site 1 out of 2 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:15.8
occ:1.00
FE A:HEM602 0.0 15.8 1.0
NA A:HEM602 2.0 13.8 1.0
ND A:HEM602 2.0 18.3 1.0
NE2 A:HIS386 2.1 14.3 1.0
NC A:HEM602 2.1 16.3 1.0
NE2 A:HIS72 2.1 13.2 1.0
NB A:HEM602 2.2 11.3 1.0
CE1 A:HIS72 3.0 13.0 1.0
CE1 A:HIS386 3.0 14.9 1.0
C1A A:HEM602 3.0 14.2 1.0
C4C A:HEM602 3.0 15.1 1.0
C4D A:HEM602 3.0 17.8 1.0
C1D A:HEM602 3.0 17.7 1.0
C1C A:HEM602 3.1 15.3 1.0
C4B A:HEM602 3.1 13.0 1.0
CD2 A:HIS386 3.1 14.4 1.0
C4A A:HEM602 3.1 14.3 1.0
C1B A:HEM602 3.2 13.5 1.0
CD2 A:HIS72 3.2 13.1 1.0
CHA A:HEM602 3.4 16.7 1.0
CHD A:HEM602 3.4 14.8 1.0
CHC A:HEM602 3.5 12.3 1.0
CHB A:HEM602 3.6 13.1 1.0
ND1 A:HIS386 4.1 15.6 1.0
ND1 A:HIS72 4.1 14.9 1.0
C3C A:HEM602 4.2 15.2 1.0
C2C A:HEM602 4.2 15.6 1.0
CG A:HIS386 4.2 16.7 1.0
CG A:HIS72 4.2 15.4 1.0
C3D A:HEM602 4.3 17.4 1.0
C2A A:HEM602 4.3 14.8 1.0
C2B A:HEM602 4.3 14.0 1.0
C2D A:HEM602 4.3 17.7 1.0
C3A A:HEM602 4.3 15.7 1.0
C3B A:HEM602 4.3 14.6 1.0
OE1 A:GLN42 4.7 21.8 1.0

Iron binding site 2 out of 2 in 4n4y

Go back to Iron Binding Sites List in 4n4y
Iron binding site 2 out of 2 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:16.2
occ:1.00
FE A:HAS603 0.0 16.2 1.0
ND A:HAS603 2.0 18.0 1.0
NC A:HAS603 2.0 15.6 1.0
NB A:HAS603 2.0 15.7 1.0
NA A:HAS603 2.0 16.5 1.0
O1 A:PEO604 2.1 18.9 1.0
NE2 A:HIS384 2.2 18.0 1.0
C4B A:HAS603 3.0 17.2 1.0
C1C A:HAS603 3.0 16.2 1.0
C1B A:HAS603 3.0 16.3 1.0
C1A A:HAS603 3.1 17.0 1.0
C4A A:HAS603 3.1 16.4 1.0
C4C A:HAS603 3.1 15.9 1.0
C4D A:HAS603 3.1 19.1 1.0
C1D A:HAS603 3.1 18.1 1.0
CE1 A:HIS384 3.1 17.3 1.0
CD2 A:HIS384 3.2 17.4 1.0
CHC A:HAS603 3.3 16.6 1.0
CHD A:HAS603 3.4 15.4 1.0
CHA A:HAS603 3.4 16.7 1.0
O2 A:PEO604 3.5 20.0 1.0
CHB A:HAS603 3.5 15.3 1.0
C2C A:HAS603 4.2 16.7 1.0
ND1 A:HIS384 4.3 17.1 1.0
C2B A:HAS603 4.3 18.6 1.0
C3B A:HAS603 4.3 19.3 1.0
C2A A:HAS603 4.3 15.7 1.0
C3C A:HAS603 4.4 16.2 1.0
C3D A:HAS603 4.4 19.9 1.0
C3A A:HAS603 4.4 14.6 1.0
CG A:HIS384 4.4 16.3 1.0
C2D A:HAS603 4.4 19.9 1.0
CU A:CU601 4.8 20.8 1.0
ND2 A:ASN366 4.8 20.0 1.0
CE1 A:HIS233 4.9 21.6 1.0

Reference:

Y.Li, Y.Chen, C.D.Stout. Structure of Recombinant Cytochrome BA3 Oxidase Mutant G232V From Thermus Thermophilus To Be Published.
Page generated: Mon Aug 5 07:09:22 2024

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