Atomistry » Iron » PDB 4oyn-4q1o » 4pl2
Atomistry »
  Iron »
    PDB 4oyn-4q1o »
      4pl2 »

Iron in PDB 4pl2: X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli

Enzymatic activity of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli

All present enzymatic activity of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli:
2.1.1.192;

Protein crystallography data

The structure of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli, PDB code: 4pl2 was solved by A.K.Boal, A.C.Rosenzweig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.21 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.438, 55.384, 262.377, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 24.4

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli (pdb code 4pl2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli, PDB code: 4pl2:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 1 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:32.3
occ:1.00
FE1 B:SF4401 0.0 32.3 1.0
SG B:CYS129 2.3 35.4 1.0
S4 B:SF4401 2.3 34.5 1.0
S3 B:SF4401 2.3 34.7 1.0
S2 B:SF4401 2.3 32.2 1.0
FE2 B:SF4401 2.7 35.1 1.0
FE3 B:SF4401 2.7 32.9 1.0
FE4 B:SF4401 2.8 35.2 1.0
CB B:CYS129 3.0 35.2 1.0
O B:HOH614 3.6 41.6 1.0
S1 B:SF4401 3.9 34.3 1.0
OG B:SER213 4.0 30.8 1.0
N B:CYS129 4.1 36.0 1.0
CB B:LEU127 4.2 38.2 1.0
CA B:CYS129 4.2 35.5 1.0
SG B:CYS132 4.5 38.9 1.0
CB B:CYS132 4.6 38.9 1.0
CD2 B:LEU127 4.8 38.8 1.0
SG B:CYS125 4.8 31.8 1.0
CB B:SER213 5.0 30.8 1.0

Iron binding site 2 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 2 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:35.1
occ:1.00
FE2 B:SF4401 0.0 35.1 1.0
SG B:CYS132 2.1 38.9 1.0
S1 B:SF4401 2.3 34.3 1.0
S3 B:SF4401 2.3 34.7 1.0
S4 B:SF4401 2.4 34.5 1.0
FE1 B:SF4401 2.7 32.3 1.0
FE4 B:SF4401 2.7 35.2 1.0
FE3 B:SF4401 2.7 32.9 1.0
CB B:CYS132 3.0 38.9 1.0
S2 B:SF4401 3.9 32.2 1.0
CB B:CYS129 4.4 35.2 1.0
CA B:GLY177 4.4 36.9 1.0
CB B:THR134 4.5 47.4 1.0
CA B:CYS132 4.5 38.6 1.0
N B:ALA135 4.6 49.2 1.0
SG B:CYS129 4.6 35.4 1.0
C B:GLY177 4.6 36.5 1.0
CB B:ALA135 4.6 50.4 1.0
O B:GLY177 4.7 38.1 1.0
SG B:CYS125 4.8 31.8 1.0
CB B:CYS125 4.8 32.7 1.0

Iron binding site 3 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 3 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:32.9
occ:1.00
FE3 B:SF4401 0.0 32.9 1.0
S4 B:SF4401 2.2 34.5 1.0
S1 B:SF4401 2.3 34.3 1.0
SG B:CYS125 2.3 31.8 1.0
S2 B:SF4401 2.3 32.2 1.0
FE1 B:SF4401 2.7 32.3 1.0
FE2 B:SF4401 2.7 35.1 1.0
FE4 B:SF4401 2.7 35.2 1.0
CB B:CYS125 3.2 32.7 1.0
S3 B:SF4401 3.9 34.7 1.0
CB B:LEU127 4.0 38.2 1.0
N B:GLU180 4.3 28.6 1.0
C B:GLY179 4.6 30.1 1.0
CA B:GLY179 4.6 30.5 1.0
CA B:CYS125 4.7 33.5 1.0
N B:LEU127 4.7 37.6 1.0
SG B:CYS132 4.7 38.9 1.0
N B:GLY179 4.7 30.8 1.0
CD2 B:LEU127 4.7 38.8 1.0
SG B:CYS129 4.8 35.4 1.0
CB B:GLU180 4.8 27.5 1.0
CA B:LEU127 4.8 37.7 1.0
CA B:GLU180 4.9 28.0 1.0
CG B:LEU127 4.9 38.5 1.0

Iron binding site 4 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 4 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:35.2
occ:1.00
FE4 B:SF4401 0.0 35.2 1.0
S1 B:SF4401 2.3 34.3 1.0
S3 B:SF4401 2.3 34.7 1.0
S2 B:SF4401 2.3 32.2 1.0
FE2 B:SF4401 2.7 35.1 1.0
FE3 B:SF4401 2.7 32.9 1.0
FE1 B:SF4401 2.8 32.3 1.0
CA B:GLY177 3.7 36.9 1.0
S4 B:SF4401 3.9 34.5 1.0
N B:GLY177 4.0 37.4 1.0
OG B:SER213 4.2 30.8 1.0
C B:GLY177 4.4 36.5 1.0
O B:HOH614 4.4 41.6 1.0
SG B:CYS132 4.6 38.9 1.0
N B:MET178 4.7 35.5 1.0
SG B:CYS129 4.8 35.4 1.0
SG B:CYS125 4.8 31.8 1.0
C B:GLY179 4.9 30.1 1.0
O B:GLY179 4.9 31.6 1.0
N B:GLY179 4.9 30.8 1.0

Iron binding site 5 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 5 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:32.3
occ:1.00
FE1 A:SF4401 0.0 32.3 1.0
S3 A:SF4401 2.2 34.9 1.0
S4 A:SF4401 2.3 34.1 1.0
S2 A:SF4401 2.4 32.1 1.0
SG A:CYS125 2.4 31.8 1.0
FE4 A:SF4401 2.7 32.6 1.0
FE2 A:SF4401 2.7 34.9 1.0
FE3 A:SF4401 2.7 35.3 1.0
CB A:CYS125 3.2 32.9 1.0
S1 A:SF4401 3.9 35.0 1.0
CB A:LEU127 4.1 38.1 1.0
N A:GLU180 4.2 29.4 1.0
SG A:CYS132 4.6 36.4 1.0
C A:GLY179 4.6 30.8 1.0
CA A:GLY179 4.6 31.4 1.0
N A:GLY179 4.6 31.5 1.0
CA A:CYS125 4.7 33.6 1.0
N A:LEU127 4.7 38.3 1.0
CD2 A:LEU127 4.7 38.9 1.0
SG A:CYS129 4.7 33.1 1.0
CB A:GLU180 4.7 28.0 1.0
CA A:GLU180 4.8 28.1 1.0
CG A:LEU127 4.9 38.5 1.0
CA A:LEU127 4.9 38.0 1.0

Iron binding site 6 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 6 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:34.9
occ:1.00
FE2 A:SF4401 0.0 34.9 1.0
SG A:CYS132 2.1 36.4 1.0
S1 A:SF4401 2.3 35.0 1.0
S4 A:SF4401 2.3 34.1 1.0
S3 A:SF4401 2.3 34.9 1.0
FE4 A:SF4401 2.7 32.6 1.0
FE1 A:SF4401 2.7 32.3 1.0
FE3 A:SF4401 2.7 35.3 1.0
CB A:CYS132 3.0 37.7 1.0
S2 A:SF4401 3.9 32.1 1.0
CB A:CYS129 4.4 34.6 1.0
CA A:GLY177 4.4 34.9 1.0
CB A:THR134 4.5 46.5 1.0
CA A:CYS132 4.5 37.9 1.0
SG A:CYS129 4.5 33.1 1.0
O A:GLY177 4.6 35.6 1.0
C A:GLY177 4.6 34.8 1.0
CB A:ALA135 4.7 49.7 1.0
N A:ALA135 4.7 49.0 1.0
SG A:CYS125 4.8 31.8 1.0
CB A:CYS125 4.9 32.9 1.0
OG1 A:THR134 4.9 45.2 1.0

Iron binding site 7 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 7 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:35.3
occ:1.00
FE3 A:SF4401 0.0 35.3 1.0
S2 A:SF4401 2.3 32.1 1.0
S4 A:SF4401 2.3 34.1 1.0
S1 A:SF4401 2.3 35.0 1.0
FE4 A:SF4401 2.7 32.6 1.0
FE2 A:SF4401 2.7 34.9 1.0
FE1 A:SF4401 2.7 32.3 1.0
CA A:GLY177 3.7 34.9 1.0
S3 A:SF4401 3.9 34.9 1.0
N A:GLY177 4.1 34.7 1.0
C A:GLY177 4.4 34.8 1.0
O A:HOH568 4.5 34.4 1.0
SG A:CYS132 4.6 36.4 1.0
N A:MET178 4.7 35.3 1.0
SG A:CYS129 4.8 33.1 1.0
SG A:CYS125 4.9 31.8 1.0
N A:GLU180 4.9 29.4 1.0
N A:GLY179 4.9 31.5 1.0
C A:GLY179 4.9 30.8 1.0

Iron binding site 8 out of 8 in 4pl2

Go back to Iron Binding Sites List in 4pl2
Iron binding site 8 out of 8 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:32.6
occ:1.00
FE4 A:SF4401 0.0 32.6 1.0
SG A:CYS129 2.2 33.1 1.0
S3 A:SF4401 2.3 34.9 1.0
S2 A:SF4401 2.3 32.1 1.0
S1 A:SF4401 2.3 35.0 1.0
FE2 A:SF4401 2.7 34.9 1.0
FE1 A:SF4401 2.7 32.3 1.0
FE3 A:SF4401 2.7 35.3 1.0
CB A:CYS129 3.1 34.6 1.0
O A:HOH568 3.7 34.4 1.0
S4 A:SF4401 3.9 34.1 1.0
N A:CYS129 4.1 35.8 1.0
CA A:CYS129 4.2 35.1 1.0
CB A:LEU127 4.2 38.1 1.0
SG A:CYS132 4.5 36.4 1.0
CB A:CYS132 4.5 37.7 1.0
CD2 A:LEU127 4.8 38.9 1.0
SG A:CYS125 4.9 31.8 1.0

Reference:

A.Silakov, T.L.Grove, M.I.Radle, M.R.Bauerle, M.T.Green, A.C.Rosenzweig, A.K.Boal, S.J.Booker. Characterization of A Cross-Linked Protein-Nucleic Acid Substrate Radical in the Reaction Catalyzed By Rlmn. J.Am.Chem.Soc. V. 136 8221 2014.
ISSN: ESSN 1520-5126
PubMed: 24806349
DOI: 10.1021/JA410560P
Page generated: Tue Aug 5 13:40:36 2025

Last articles

Mg in 4JI6
Mg in 4JJS
Mg in 4JJ2
Mg in 4JIW
Mg in 4JIV
Mg in 4JIB
Mg in 4JI4
Mg in 4JI5
Mg in 4JI1
Mg in 4JI0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy