Atomistry » Iron » PDB 4r33-4rxn » 4rku
Atomistry »
  Iron »
    PDB 4r33-4rxn »
      4rku »

Iron in PDB 4rku: Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution

Enzymatic activity of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution:
1.97.1.12;

Protein crystallography data

The structure of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution, PDB code: 4rku was solved by Y.Mazor, A.Borovikova, I.Greenberg, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.69 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 120.631, 189.168, 129.667, 90.00, 91.11, 90.00
R / Rfree (%) 25.8 / 29.3

Other elements in 4rku:

The structure of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution also contains other interesting chemical elements:

Magnesium (Mg) 158 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution (pdb code 4rku). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution, PDB code: 4rku:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 1 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe8001

b:69.6
occ:1.00
 FE1 A:SF48001 0.0 69.6 1.0
S4 A:SF48001 2.3 60.4 1.0
S2 A:SF48001 2.3 50.5 1.0
S3 A:SF48001 2.3 75.8 1.0
FE3 A:SF48001 2.7 71.8 1.0
FE2 A:SF48001 2.7 64.8 1.0
FE4 A:SF48001 2.7 58.8 1.0
SG B:CYS559 2.8 63.8 1.0
CB B:CYS559 3.5 41.5 1.0
S1 A:SF48001 3.9 64.9 1.0
CA B:GLY561 4.5 38.5 1.0
N B:GLY561 4.5 40.6 1.0
C B:GLY561 4.6 44.7 1.0
SG B:CYS568 4.7 63.6 1.0
O B:GLY561 4.7 45.9 1.0
CD A:PRO584 4.8 34.0 1.0
N A:PRO584 4.9 34.2 1.0
CA B:CYS559 4.9 52.0 1.0
CA B:CYS568 5.0 36.8 1.0

Iron binding site 2 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 2 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe8001

b:64.8
occ:1.00
 FE2 A:SF48001 0.0 64.8 1.0
S1 A:SF48001 2.3 64.9 1.0
S3 A:SF48001 2.3 75.8 1.0
S4 A:SF48001 2.3 60.4 1.0
FE4 A:SF48001 2.7 58.8 1.0
FE1 A:SF48001 2.7 69.6 1.0
FE3 A:SF48001 2.7 71.8 1.0
SG B:CYS568 2.9 63.6 1.0
CB B:CYS568 3.9 31.4 1.0
S2 A:SF48001 3.9 50.5 1.0
CD1 A:ILE727 3.9 47.5 1.0
CG2 A:ILE727 4.1 50.4 1.0
CZ3 B:TRP667 4.2 54.4 1.0
CA B:CYS568 4.5 36.8 1.0
SG A:CYS581 4.7 52.5 1.0
CG1 A:ILE727 4.8 50.7 1.0
NH2 A:ARG731 4.8 61.4 1.0
CE3 B:TRP667 4.8 57.0 1.0
N B:CYS568 4.8 44.8 1.0

Iron binding site 3 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 3 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe8001

b:71.8
occ:1.00
 FE3 A:SF48001 0.0 71.8 1.0
S4 A:SF48001 2.3 60.4 1.0
S2 A:SF48001 2.3 50.5 1.0
S1 A:SF48001 2.3 64.9 1.0
FE1 A:SF48001 2.7 69.6 1.0
FE2 A:SF48001 2.7 64.8 1.0
FE4 A:SF48001 2.7 58.8 1.0
SG A:CYS581 2.8 52.5 1.0
CB A:CYS581 3.1 35.2 1.0
S3 A:SF48001 3.9 75.8 1.0
SG A:CYS590 4.4 55.3 1.0
N A:GLY583 4.4 42.6 1.0
C A:GLY583 4.4 40.9 1.0
O A:GLY583 4.5 42.9 1.0
CA A:GLY583 4.5 35.1 1.0
CA A:CYS581 4.6 45.9 1.0
CA A:CYS590 4.8 46.0 1.0
CB A:CYS590 4.8 50.2 1.0
N A:PRO584 4.9 34.2 1.0
O A:THR589 4.9 50.1 1.0

Iron binding site 4 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 4 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe8001

b:58.8
occ:1.00
 FE4 A:SF48001 0.0 58.8 1.0
S3 A:SF48001 2.3 75.8 1.0
S1 A:SF48001 2.3 64.9 1.0
S2 A:SF48001 2.3 50.5 1.0
FE2 A:SF48001 2.7 64.8 1.0
FE1 A:SF48001 2.7 69.6 1.0
FE3 A:SF48001 2.7 71.8 1.0
SG A:CYS590 2.9 55.3 1.0
CB A:CYS590 3.8 50.2 1.0
S4 A:SF48001 3.9 60.4 1.0
CD1 B:ILE702 4.1 33.8 1.0
CE3 B:TRP667 4.3 57.0 1.0
CZ3 B:TRP667 4.4 54.4 1.0
CG2 B:ILE702 4.6 31.4 1.0
CA A:CYS590 4.7 46.0 1.0
SG B:CYS559 4.7 63.8 1.0
CG1 B:ILE702 4.8 33.6 1.0

Iron binding site 5 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 5 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe8002

b:68.7
occ:1.00
 FE1 C:SF48002 0.0 68.7 1.0
S3 C:SF48002 2.3 74.1 1.0
S2 C:SF48002 2.3 61.5 1.0
S4 C:SF48002 2.3 53.9 1.0
FE4 C:SF48002 2.7 92.3 1.0
FE2 C:SF48002 2.7 58.2 1.0
FE3 C:SF48002 2.7 66.0 1.0
SG C:CYS21 2.9 64.0 1.0
CB C:CYS21 3.3 65.5 1.0
S1 C:SF48002 3.9 79.9 1.0
CG2 C:VAL25 3.9 41.5 1.0
CB C:VAL25 3.9 40.8 1.0
CA C:CYS21 4.0 70.9 1.0
OG1 C:THR23 4.4 57.6 1.0
CD C:PRO22 4.5 74.9 1.0
CD1 C:LEU26 4.6 40.7 1.0
CG1 C:VAL25 4.8 40.2 1.0
N C:VAL25 4.8 54.5 1.0
C C:CYS21 4.9 67.9 1.0
N C:PRO22 5.0 73.3 1.0
CA C:VAL25 5.0 52.7 1.0
N C:CYS21 5.0 75.5 1.0
CG C:LEU26 5.0 62.2 1.0

Iron binding site 6 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 6 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe8002

b:58.2
occ:1.00
 FE2 C:SF48002 0.0 58.2 1.0
S4 C:SF48002 2.3 53.9 1.0
S1 C:SF48002 2.3 79.9 1.0
S3 C:SF48002 2.3 74.1 1.0
FE3 C:SF48002 2.7 66.0 1.0
FE1 C:SF48002 2.7 68.7 1.0
FE4 C:SF48002 2.8 92.3 1.0
SG C:CYS54 2.9 40.5 1.0
CB C:CYS54 3.3 61.9 1.0
N C:CYS54 3.9 66.4 1.0
S2 C:SF48002 3.9 61.5 1.0
CG2 C:VAL67 4.0 40.4 1.0
CA C:CYS54 4.2 66.5 1.0
N C:LYS52 4.3 67.2 1.0
CA C:LYS52 4.4 57.2 1.0
N C:ARG53 4.4 37.6 1.0
C C:LYS52 4.7 50.0 1.0
CD1 C:LEU26 4.7 40.7 1.0

Iron binding site 7 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 7 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe8002

b:66.0
occ:1.00
 FE3 C:SF48002 0.0 66.0 1.0
S1 C:SF48002 2.3 79.9 1.0
S4 C:SF48002 2.3 53.9 1.0
S2 C:SF48002 2.3 61.5 1.0
FE4 C:SF48002 2.7 92.3 1.0
FE2 C:SF48002 2.7 58.2 1.0
FE1 C:SF48002 2.7 68.7 1.0
SG C:CYS51 2.9 41.2 1.0
N C:CYS51 3.5 51.6 1.0
N C:LYS52 3.9 67.2 1.0
S3 C:SF48002 3.9 74.1 1.0
CB C:CYS51 4.1 76.9 1.0
CG2 C:VAL49 4.1 50.2 1.0
N C:GLY50 4.1 52.6 1.0
CA C:CYS51 4.2 62.1 1.0
N C:ARG53 4.4 37.6 1.0
C C:CYS51 4.4 61.9 1.0
C C:GLY50 4.4 45.4 1.0
CD C:PRO22 4.5 74.9 1.0
CA C:GLY50 4.5 47.5 1.0
CA C:LYS52 4.7 57.2 1.0
N C:VAL49 4.9 55.9 1.0
SG C:CYS48 5.0 56.4 1.0
CB C:ARG53 5.0 39.0 1.0

Iron binding site 8 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 8 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe8002

b:92.3
occ:1.00
 FE4 C:SF48002 0.0 92.3 1.0
S2 C:SF48002 2.3 61.5 1.0
S3 C:SF48002 2.3 74.1 1.0
S1 C:SF48002 2.3 79.9 1.0
SG C:CYS48 2.7 56.4 1.0
FE3 C:SF48002 2.7 66.0 1.0
FE1 C:SF48002 2.7 68.7 1.0
FE2 C:SF48002 2.8 58.2 1.0
CB C:CYS48 3.8 55.5 1.0
S4 C:SF48002 3.9 53.9 1.0
N C:GLY50 4.0 52.6 1.0
CA C:CYS48 4.2 54.3 1.0
CA C:GLY50 4.3 47.5 1.0
N C:VAL49 4.4 55.9 1.0
CG2 C:VAL67 4.5 40.4 1.0
CG2 C:VAL25 4.5 41.5 1.0
CG2 C:VAL5 4.5 54.5 1.0
CB C:VAL25 4.6 40.8 1.0
C C:CYS48 4.7 59.3 1.0
CG1 C:VAL25 4.7 40.2 1.0
N C:CYS51 4.8 51.6 1.0
CG1 C:VAL67 4.9 44.2 1.0
C C:GLY50 5.0 45.4 1.0

Iron binding site 9 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 9 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe8003

b:61.5
occ:1.00
 FE1 C:SF48003 0.0 61.5 1.0
S3 C:SF48003 2.3 55.2 1.0
S4 C:SF48003 2.3 92.9 1.0
S2 C:SF48003 2.3 72.6 1.0
FE2 C:SF48003 2.7 87.6 1.0
FE4 C:SF48003 2.7 53.9 1.0
FE3 C:SF48003 2.7 63.3 1.0
SG C:CYS14 2.9 67.1 1.0
N C:CYS14 3.5 76.0 1.0
CB C:CYS14 3.7 80.5 1.0
N C:THR15 3.8 81.3 1.0
S1 C:SF48003 3.9 89.7 1.0
CA C:CYS14 4.0 73.4 1.0
CD C:PRO59 4.1 63.1 1.0
C C:CYS14 4.2 80.5 1.0
N C:GLN16 4.3 92.5 1.0
C C:GLY13 4.6 64.4 1.0
N C:GLY13 4.6 59.1 1.0
CA C:GLY13 4.7 59.7 1.0
CA C:THR15 4.8 80.8 1.0
CG C:PRO59 4.8 69.0 1.0
N C:CYS17 4.9 88.6 1.0
CG1 C:ILE12 4.9 60.6 1.0

Iron binding site 10 out of 12 in 4rku

Go back to Iron Binding Sites List in 4rku
Iron binding site 10 out of 12 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe8003

b:87.6
occ:1.00
 FE2 C:SF48003 0.0 87.6 1.0
S4 C:SF48003 2.3 92.9 1.0
S3 C:SF48003 2.3 55.2 1.0
S1 C:SF48003 2.3 89.7 1.0
FE4 C:SF48003 2.7 53.9 1.0
FE1 C:SF48003 2.7 61.5 1.0
FE3 C:SF48003 2.7 63.3 1.0
SG C:CYS11 3.0 92.1 1.0
CB C:CYS11 3.2 58.7 1.0
N C:GLY13 3.8 59.1 1.0
S2 C:SF48003 3.9 72.6 1.0
CA C:CYS11 4.1 59.6 1.0
N C:ILE12 4.1 69.4 1.0
CA C:GLY13 4.2 59.7 1.0
CB C:ALA40 4.2 70.5 1.0
N C:ALA40 4.4 74.6 1.0
N C:CYS14 4.5 76.0 1.0
C C:CYS11 4.6 68.4 1.0
CB C:SER64 4.6 61.6 1.0
C C:GLY13 4.9 64.4 1.0
C C:ILE12 4.9 62.5 1.0
CA C:ALA40 4.9 80.0 1.0
OG C:SER64 5.0 67.7 1.0

Reference:

Y.Mazor, A.Borovikova, I.Greenberg, N.Nelson. Crystal Structure of Plant Photosystem I at 3.1 Angstrom Resolution To Be Published.
Page generated: Tue Aug 5 14:11:05 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy