Atomistry » Iron » PDB 4zoh-5ade » 4zoh
Atomistry »
  Iron »
    PDB 4zoh-5ade »
      4zoh »

Iron in PDB 4zoh: Crystal Structure of Glyceraldehyde Oxidoreductase

Protein crystallography data

The structure of Crystal Structure of Glyceraldehyde Oxidoreductase, PDB code: 4zoh was solved by H.Nishimasu, S.Fushinobu, T.Wakagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.40 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.431, 143.431, 235.509, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 24.2

Other elements in 4zoh:

The structure of Crystal Structure of Glyceraldehyde Oxidoreductase also contains other interesting chemical elements:

Molybdenum (Mo) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Glyceraldehyde Oxidoreductase (pdb code 4zoh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Glyceraldehyde Oxidoreductase, PDB code: 4zoh:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 4zoh

Go back to Iron Binding Sites List in 4zoh
Iron binding site 1 out of 4 in the Crystal Structure of Glyceraldehyde Oxidoreductase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Glyceraldehyde Oxidoreductase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:21.6
occ:1.00
FE1 C:FES201 0.0 21.6 1.0
SG C:CYS52 2.2 18.5 1.0
S2 C:FES201 2.2 21.1 1.0
S1 C:FES201 2.2 23.6 1.0
SG C:CYS47 2.3 24.4 1.0
FE2 C:FES201 2.8 20.7 1.0
CB C:CYS52 3.4 20.6 1.0
CB C:CYS47 3.5 22.1 1.0
N C:CYS47 3.5 18.9 1.0
N C:CYS52 3.5 24.3 1.0
N C:GLY53 3.8 18.2 1.0
CA C:CYS52 3.8 19.9 1.0
CA C:CYS47 3.9 22.4 1.0
O C:CYS47 4.0 24.0 1.0
C C:CYS47 4.2 22.1 1.0
N C:GLY46 4.2 22.4 1.0
C C:CYS52 4.2 19.2 1.0
C C:GLY46 4.2 20.9 1.0
O C:HOH307 4.3 30.4 1.0
SG C:CYS67 4.3 20.5 1.0
N C:ASN51 4.4 29.2 1.0
N C:ALA54 4.4 20.1 1.0
CA C:GLY46 4.5 21.6 1.0
CA C:SER50 4.6 25.4 1.0
N C:SER50 4.6 25.1 1.0
C C:ASN51 4.6 33.6 1.0
C C:SER50 4.6 27.3 1.0
SG C:CYS55 4.7 21.7 1.0
CA C:GLY53 4.8 18.1 1.0

Iron binding site 2 out of 4 in 4zoh

Go back to Iron Binding Sites List in 4zoh
Iron binding site 2 out of 4 in the Crystal Structure of Glyceraldehyde Oxidoreductase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Glyceraldehyde Oxidoreductase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:20.7
occ:1.00
FE2 C:FES201 0.0 20.7 1.0
S2 C:FES201 2.2 21.1 1.0
S1 C:FES201 2.2 23.6 1.0
SG C:CYS55 2.2 21.7 1.0
SG C:CYS67 2.3 20.5 1.0
FE1 C:FES201 2.8 21.6 1.0
CB C:CYS67 3.1 19.1 1.0
CB C:CYS55 3.3 18.8 1.0
O C:HOH307 4.0 30.4 1.0
N C:CYS55 4.2 18.1 1.0
N C:CYS67 4.2 17.0 1.0
CA C:CYS67 4.3 18.9 1.0
CB C:LYS65 4.3 20.6 1.0
CA C:CYS55 4.4 20.3 1.0
SG C:CYS52 4.5 18.5 1.0
SG C:CYS47 4.6 24.4 1.0
N C:GLY53 4.7 18.2 1.0
CA C:SER50 4.7 25.4 1.0
CG C:LYS65 4.8 18.1 1.0
N C:ALA54 4.8 20.1 1.0
CA C:LYS65 4.9 21.3 1.0
CA C:GLY53 5.0 18.1 1.0

Iron binding site 3 out of 4 in 4zoh

Go back to Iron Binding Sites List in 4zoh
Iron binding site 3 out of 4 in the Crystal Structure of Glyceraldehyde Oxidoreductase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Glyceraldehyde Oxidoreductase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:21.7
occ:1.00
FE1 C:FES202 0.0 21.7 1.0
S2 C:FES202 2.2 23.6 1.0
S1 C:FES202 2.2 21.7 1.0
SG C:CYS109 2.3 21.4 1.0
SG C:CYS141 2.3 20.5 1.0
FE2 C:FES202 2.8 22.6 1.0
CB C:CYS141 3.3 18.8 1.0
CB C:CYS109 3.4 17.5 1.0
CA C:CYS141 3.8 19.4 1.0
N C:CYS109 4.1 16.4 1.0
N C:ARG142 4.2 23.7 1.0
CA C:CYS109 4.4 17.1 1.0
CB C:CYS143 4.4 22.3 1.0
N C:CYS143 4.4 20.4 1.0
C C:CYS141 4.4 22.3 1.0
SG C:CYS143 4.5 24.9 1.0
O C:HOH347 4.5 22.4 1.0
CG2 C:THR144 4.6 17.7 1.0
SG C:CYS106 4.8 20.6 1.0
OG1 C:THR110 4.9 19.4 1.0
O C:LEU140 4.9 18.3 1.0
CA C:CYS143 5.0 21.5 1.0
N C:THR144 5.0 22.1 1.0

Iron binding site 4 out of 4 in 4zoh

Go back to Iron Binding Sites List in 4zoh
Iron binding site 4 out of 4 in the Crystal Structure of Glyceraldehyde Oxidoreductase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Glyceraldehyde Oxidoreductase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:22.6
occ:1.00
FE2 C:FES202 0.0 22.6 1.0
S1 C:FES202 2.1 21.7 1.0
S2 C:FES202 2.3 23.6 1.0
SG C:CYS143 2.3 24.9 1.0
SG C:CYS106 2.4 20.6 1.0
FE1 C:FES202 2.8 21.7 1.0
CB C:CYS143 3.2 22.3 1.0
CB C:CYS106 3.5 18.6 1.0
N C:CYS106 3.7 19.2 1.0
O A:HOH1061 3.7 14.8 1.0
N C:GLY107 3.9 20.9 1.0
CA C:CYS106 4.0 19.2 1.0
N C:CYS143 4.1 20.4 1.0
CA C:CYS143 4.3 21.5 1.0
C C:CYS106 4.3 20.0 1.0
N C:TYR108 4.4 19.4 1.0
SG C:CYS141 4.4 20.5 1.0
SG C:CYS109 4.7 21.4 1.0
C C:GLN105 4.7 19.5 1.0
CB C:GLN105 4.8 18.8 1.0
N C:ARG142 4.8 23.7 1.0
N C:CYS109 4.9 16.4 1.0
N C:GLN105 4.9 17.7 1.0

Reference:

T.Wakagi, H.Nishimasu, M.Miyake, S.Fushinobu. Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities Through Unique Subunit Assemblies. Plos One V. 11 47333.
ISSN: ESSN 1932-6203
PubMed: 26808202
DOI: 10.1371/JOURNAL.PONE.0147333
Page generated: Mon Aug 5 18:42:36 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy