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Iron in PDB 5cyt: Refinement of Myoglobin and Cytochrome C

Protein crystallography data

The structure of Refinement of Myoglobin and Cytochrome C, PDB code: 5cyt was solved by T.Takano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 37.330, 87.100, 34.440, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Refinement of Myoglobin and Cytochrome C (pdb code 5cyt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Refinement of Myoglobin and Cytochrome C, PDB code: 5cyt:

Iron binding site 1 out of 1 in 5cyt

Go back to Iron Binding Sites List in 5cyt
Iron binding site 1 out of 1 in the Refinement of Myoglobin and Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Refinement of Myoglobin and Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Fe105

b:7.0
occ:1.00
FE R:HEM105 0.0 7.0 1.0
NE2 R:HIS18 2.0 10.3 1.0
NA R:HEM105 2.0 8.6 1.0
ND R:HEM105 2.0 10.9 1.0
NC R:HEM105 2.0 11.8 1.0
NB R:HEM105 2.1 12.3 1.0
SD R:MET80 2.3 9.3 1.0
CE1 R:HIS18 3.0 9.1 1.0
C1A R:HEM105 3.0 11.6 1.0
CD2 R:HIS18 3.0 11.1 1.0
C4A R:HEM105 3.0 19.4 1.0
C4D R:HEM105 3.0 10.6 1.0
C1C R:HEM105 3.0 15.8 1.0
C1B R:HEM105 3.1 12.9 1.0
C4C R:HEM105 3.1 14.6 1.0
C4B R:HEM105 3.1 12.3 1.0
C1D R:HEM105 3.1 13.9 1.0
CHA R:HEM105 3.4 12.8 1.0
CHB R:HEM105 3.4 17.9 1.0
CHC R:HEM105 3.4 10.9 1.0
CE R:MET80 3.4 11.6 1.0
CHD R:HEM105 3.4 13.0 1.0
CG R:MET80 3.5 13.1 1.0
ND1 R:HIS18 4.1 8.0 1.0
CG R:HIS18 4.2 12.1 1.0
C2A R:HEM105 4.2 13.4 1.0
C3A R:HEM105 4.2 15.5 1.0
C2C R:HEM105 4.2 12.6 1.0
CB R:MET80 4.2 11.8 1.0
C3C R:HEM105 4.2 17.0 1.0
C2B R:HEM105 4.2 14.2 1.0
C3D R:HEM105 4.3 9.1 1.0
C3B R:HEM105 4.3 15.3 1.0
C2D R:HEM105 4.3 9.8 1.0
OH R:TYR67 4.8 15.9 1.0

Reference:

T.Takano, T.Takano. N/A N/A.
Page generated: Mon Aug 5 21:38:25 2024

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