Atomistry » Iron » PDB 5cne-5da5 » 5d9y
Atomistry »
  Iron »
    PDB 5cne-5da5 »
      5d9y »

Iron in PDB 5d9y: Crystal Structure of TET2-5FC Complex

Protein crystallography data

The structure of Crystal Structure of TET2-5FC Complex, PDB code: 5d9y was solved by L.Hu, J.Cheng, Q.Rao, Z.Li, J.Li, Y.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.77 / 1.97
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 48.154, 87.958, 268.020, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.8

Other elements in 5d9y:

The structure of Crystal Structure of TET2-5FC Complex also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of TET2-5FC Complex (pdb code 5d9y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of TET2-5FC Complex, PDB code: 5d9y:

Iron binding site 1 out of 1 in 5d9y

Go back to Iron Binding Sites List in 5d9y
Iron binding site 1 out of 1 in the Crystal Structure of TET2-5FC Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of TET2-5FC Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2002

b:19.7
occ:1.00
O A:HOH2136 2.1 22.5 1.0
OD2 A:ASP1384 2.1 20.2 1.0
O2' A:OGA2001 2.2 26.2 1.0
NE2 A:HIS1881 2.2 18.9 1.0
NE2 A:HIS1382 2.3 14.1 1.0
O1 A:OGA2001 2.4 27.6 1.0
CE1 A:HIS1881 2.9 18.0 1.0
CG A:ASP1384 2.9 20.7 1.0
C2 A:OGA2001 3.0 25.9 1.0
OD1 A:ASP1384 3.0 26.1 1.0
CE1 A:HIS1382 3.1 21.7 1.0
C1 A:OGA2001 3.1 26.6 1.0
CD2 A:HIS1881 3.3 18.9 1.0
CD2 A:HIS1382 3.3 18.3 1.0
O A:HOH2106 3.7 34.5 1.0
NH2 A:ARG1261 4.0 22.7 1.0
ND1 A:HIS1881 4.1 21.2 1.0
O A:HOH2177 4.2 28.7 1.0
ND1 A:HIS1382 4.2 13.7 1.0
CG A:HIS1881 4.3 20.4 1.0
O2 A:OGA2001 4.3 26.0 1.0
N1 A:OGA2001 4.3 23.8 1.0
CG A:HIS1382 4.4 18.8 1.0
CB A:ASP1384 4.4 17.8 1.0
O5A B:5FC6 4.5 24.4 1.0
CB A:ALA1876 4.5 18.4 1.0
C4 A:OGA2001 4.9 19.7 1.0
N A:ASP1384 5.0 19.1 1.0

Reference:

L.Hu, J.Lu, J.Cheng, Q.Rao, Z.Li, H.Hou, Z.Lou, L.Zhang, W.Li, W.Gong, M.Liu, C.Sun, X.Yin, J.Li, X.Tan, P.Wang, Y.Wang, D.Fang, Q.Cui, P.Yang, C.He, H.Jiang, C.Luo, Y.Xu. Structural Insight Into Substrate Preference For Tet-Mediated Oxidation. Nature V. 527 118 2015.
ISSN: ESSN 1476-4687
PubMed: 26524525
DOI: 10.1038/NATURE15713
Page generated: Mon Aug 5 22:02:52 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy