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Iron in PDB 5eeo: Soybean Lipoxygenase(L1)-T756R

Enzymatic activity of Soybean Lipoxygenase(L1)-T756R

All present enzymatic activity of Soybean Lipoxygenase(L1)-T756R:
1.13.11.12;

Protein crystallography data

The structure of Soybean Lipoxygenase(L1)-T756R, PDB code: 5eeo was solved by B.Mikami, T.Nagaya, Y.Hioki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.70 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.708, 62.361, 92.351, 90.00, 103.25, 90.00
R / Rfree (%) 18.6 / 25.4

Iron Binding Sites:

The binding sites of Iron atom in the Soybean Lipoxygenase(L1)-T756R (pdb code 5eeo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Soybean Lipoxygenase(L1)-T756R, PDB code: 5eeo:

Iron binding site 1 out of 1 in 5eeo

Go back to Iron Binding Sites List in 5eeo
Iron binding site 1 out of 1 in the Soybean Lipoxygenase(L1)-T756R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Soybean Lipoxygenase(L1)-T756R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe900

b:13.7
occ:1.00
NE2 A:HIS690 2.3 4.4 1.0
NE2 A:HIS504 2.3 8.1 1.0
OXT A:ILE839 2.4 10.7 1.0
NE2 A:HIS499 2.5 9.4 1.0
O A:HOH1049 2.5 21.8 1.0
OD1 A:ASN694 2.7 13.1 1.0
CE1 A:HIS504 3.0 8.6 1.0
CE1 A:HIS690 3.1 3.1 1.0
C A:ILE839 3.3 18.6 1.0
CD2 A:HIS690 3.4 3.7 1.0
CE1 A:HIS499 3.4 12.3 1.0
O A:ILE839 3.4 19.1 1.0
CD2 A:HIS499 3.5 12.6 1.0
CG A:ASN694 3.5 5.0 1.0
CD2 A:HIS504 3.5 5.3 1.0
CB A:ASN694 4.0 3.9 1.0
ND1 A:HIS504 4.3 7.0 1.0
ND1 A:HIS690 4.3 5.3 1.0
ND2 A:ASN694 4.4 4.5 1.0
CG A:HIS690 4.4 3.9 1.0
CG2 A:ILE837 4.4 3.2 1.0
CG A:HIS504 4.5 6.3 1.0
ND1 A:HIS499 4.5 14.5 1.0
CG A:HIS499 4.6 20.5 1.0
CA A:ILE839 4.7 8.6 1.0
N A:ILE839 4.9 8.0 1.0
CG2 A:ILE839 4.9 11.8 1.0

Reference:

B.Mikami, T.Nagaya, Y.Hioki. The Structural Basis For Specificity in Lipoxygenase Catalysis To Be Published.
Page generated: Tue Aug 6 00:27:24 2024

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