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Iron in PDB 5epa: Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Protein crystallography data
The structure of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis, PDB code: 5epa
was solved by
B.Selvaraj,
Y.Lindqvist,
V.Siitonen,
L.Niiranen,
M.Metsa-Ketela,
G.Schneider,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.70 / 2.24 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 76.009, 83.151, 271.677, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19.3 / 22.8 |
Other elements in 5epa:
The structure of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis also contains other interesting chemical elements:
| Magnesium | (Mg) | 3 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
(pdb code 5epa). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis, PDB code: 5epa:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis, PDB code: 5epa:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 5epa
Go back to
Iron Binding Sites List in 5epa
Iron binding site 1 out
of 6 in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis within 5.0Å range:
|
Iron binding site 2 out of 6 in 5epa
Go back to
Iron Binding Sites List in 5epa
Iron binding site 2 out
of 6 in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis within 5.0Å range:
|
Iron binding site 3 out of 6 in 5epa
Go back to
Iron Binding Sites List in 5epa
Iron binding site 3 out
of 6 in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis within 5.0Å range:
|
Iron binding site 4 out of 6 in 5epa
Go back to
Iron Binding Sites List in 5epa
Iron binding site 4 out
of 6 in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis within 5.0Å range:
|
Iron binding site 5 out of 6 in 5epa
Go back to
Iron Binding Sites List in 5epa
Iron binding site 5 out
of 6 in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis within 5.0Å range:
|
Iron binding site 6 out of 6 in 5epa
Go back to
Iron Binding Sites List in 5epa
Iron binding site 6 out
of 6 in the Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Non-Heme Alpha Ketoglutarate Dependent Carbocyclase Snok From Nogalamycin Biosynthesis within 5.0Å range:
|
Reference:
V.Siitonen,
B.Selvaraj,
L.Niiranen,
Y.Lindqvist,
G.Schneider,
M.Metsa-Ketela.
Divergent Non-Heme Iron Enzymes in the Nogalamycin Biosynthetic Pathway. Proc.Natl.Acad.Sci.Usa V. 113 5251 2016.
ISSN: ESSN 1091-6490
PubMed: 27114534
DOI: 10.1073/PNAS.1525034113
Page generated: Tue Aug 5 21:10:17 2025
ISSN: ESSN 1091-6490
PubMed: 27114534
DOI: 10.1073/PNAS.1525034113
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